Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1183 ATGAGCAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTCAACTTCCAGAGAAGAGAATCGTGCCAGCGATGCGGGGAGCCAAGGAGTGCCGGCGACTACGGCGGCGCCTTCGGAGGCAGAGGCTCTTCCTCCTTTGGCTTCACCACTGGCCCTGATGTTCGCCCCGGTGACTGGTACTGCACCGTCGGAAACTGTGGAGCCCACAACTTCGCCAGCCGCTCCAGCTGCTTCAAGTGCGGTGTCTCCAAGGAGGACTCCTCCACCGGATCATACGACCTCGACATCACCCGAATGAGACCCTACGGCTTCGGCAGCGGCTCCTCCGCCCGACCCGGCTGGAAATCCGGTGACTGGATATGCACCAGGTCTGGATGCAACGAGCATAACTTCGCCAATAGAATGGAGTGCTACAGATGCAATGCACCCAGGGACTCTAATAGTGGCAGACCTCCCTATTCATCGTAG 471 0.5881 MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSAGDYGGAFGGRGSSSFGFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGVSKEDSSTGSYDLDITRMRPYGFGSGSSARPGWKSGDWICTRSGCNEHNFANRMECYRCNAPRDSNSGRPPYSS* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1183 156 SUPERFAMILY Ran binding protein zinc finger-like 2 32 IPR036443 -
Vra5g1183 156 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Vra5g1183 156 SMART zf_4 5 29 IPR001876 -
Vra5g1183 156 SMART zf_4 58 84 IPR001876 -
Vra5g1183 156 SMART zf_4 118 144 IPR001876 -
Vra5g1183 156 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Vra5g1183 156 SUPERFAMILY Ran binding protein zinc finger-like 52 87 IPR036443 -
Vra5g1183 156 ProSitePatterns Zinc finger RanBP2-type signature. 60 81 IPR001876 -
Vra5g1183 156 PANTHER ZINC FINGER PROTEIN 1 149 - -
Vra5g1183 156 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 1 149 - -
Vra5g1183 156 ProSitePatterns Zinc finger RanBP2-type signature. 120 141 IPR001876 -
Vra5g1183 156 Gene3D - 2 34 - -
Vra5g1183 156 Gene3D - 108 148 - -
Vra5g1183 156 Gene3D - 51 88 - -
Vra5g1183 156 ProSiteProfiles Zinc finger RanBP2 type profile. 116 147 IPR001876 -
Vra5g1183 156 ProSiteProfiles Zinc finger RanBP2 type profile. 56 87 IPR001876 -
Vra5g1183 156 SUPERFAMILY Ran binding protein zinc finger-like 110 148 IPR036443 -
Vra5g1183 156 Pfam Zn-finger in Ran binding protein and others 116 145 IPR001876 -
Vra5g1183 156 Pfam Zn-finger in Ran binding protein and others 3 30 IPR001876 -
Vra5g1183 156 Pfam Zn-finger in Ran binding protein and others 56 86 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1183 Vra-Chr5 18244440 18246193 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1183 - - gmx:100811107 293.893