Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra5g1182 | ATGAGCTACAGCAGCTCCTCAATGAGTTCTGGTAGCGGGAGTTCTAGAAGGGCATTTGAGTTTGGGAGGACCCATGTGGTCAGACCTAAAGGGAAACACCAGGCAACTATAGTTTGGCTACACGGCCTTGGTGACAATGGCTCGAGCTGGTCCCAACTCTTGGAATCTCTTCCTCTTCCAAATATTAAATGGATTTGCCCGACTGCTCCTACACGGCCTGTAGCTATATTTGGTGGATTTCCTTGCACTGCTTGGTTTGATGTTGGAGAGATTTCAGAAGATGTTCCTAGTGATTTGGAGGGTTTAGATGCTTCTGCAGCACATGTTGCCAATCTTTTGTCAACAGAGCCTCCTAACATCAAACTTGGTATTGGCGGCTTCAGTATGGGTGCTGCAACTGCACTTTACTCAGCTACATGCCATGTTTTGGGGCACTATAGGAATGGAAACATTTACCCTATCAACTTAAGTGCTGTTGTTTCTTTGAGCGGCTGGCTTCCTTGTGCAAGGACCTTGAAGAACCAAATTGAGCAATCACGTGATGGCAGAAGGCGTGCAGCATCGTTGCCCTTATTTCTCTGCCATGGAAAAGGTGATGATGTGGTTGCATACGAACACGGAGAGAGGTCTGCAATGGCCTTAAGTTCAGCAGGATTTCCAAATCTTATGTTTAGGAGCTACAATGGGTTGGGTCACTATACAGTCCCTGAAGAGACTGATGAAGTTTGCAGGTGGCTAACTGCAAATCTGGGATTGGAGGGGTTTCGGTTGAACTAG | 777 | 0.4685 | MSYSSSSMSSGSGSSRRAFEFGRTHVVRPKGKHQATIVWLHGLGDNGSSWSQLLESLPLPNIKWICPTAPTRPVAIFGGFPCTAWFDVGEISEDVPSDLEGLDASAAHVANLLSTEPPNIKLGIGGFSMGAATALYSATCHVLGHYRNGNIYPINLSAVVSLSGWLPCARTLKNQIEQSRDGRRRAASLPLFLCHGKGDDVVAYEHGERSAMALSSAGFPNLMFRSYNGLGHYTVPEETDEVCRWLTANLGLEGFRLN* | 259 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra5g1182 | 258 | PANTHER | ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN | 1 | 254 | - | - | |
| Vra5g1182 | 258 | Gene3D | alpha/beta hydrolase | 14 | 251 | IPR029058 | - | |
| Vra5g1182 | 258 | SUPERFAMILY | alpha/beta-Hydrolases | 25 | 249 | IPR029058 | - | |
| Vra5g1182 | 258 | Pfam | Phospholipase/Carboxylesterase | 25 | 247 | IPR003140 | GO:0016787 | |
| Vra5g1182 | 258 | PANTHER | ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN | 1 | 254 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra5g1182 | Vra-Chr5 | 18232383 | 18237925 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra5g1182 | 1 | 254 | Acyl Lipid Metabolism Gene Families | AT5G20060 | 67.717 | 2.03e-131 | 370 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra5g1182 | K06130 | - | gmx:100811642 | 486.878 |