Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1175 ATGGCTGCTACTCCTTCTTCTACATACCCTTTTGGAGTTCCTTTCCACTCTCTGGGTAAAAGACTGGATTGCTCAACCTCCATGTTCCCCCTCCACGTGGAACTCTCTACAATTTCTGTGTCCCCTCGTTCTACTTCGAAGGGATTAGTTGATCGAGTATGTGCACAGTTTGATAATGCTGATTACTACTGGGAGAAAGTTCCGACACCCATTCTTGATATGGTTGAAAACCCTCTTTGCTTGAAGAACTTCTCTATTAAGGAACTGAAACAACTAGCAGTTGAAATCCGTTCAGATTTGTCTTCTATTATGTTACGTACACAAATATCAGCGAAAGCAAGTATGGCAGTGGTGGAACTGACAGTTGCAATACATTATGTTTTCAATGCTCCAGTGGACAAAATATTGTGGGATGTTGGGGATCAAACGTATGCACATAAGATTCTTACTGGAAGGCGACCTCTCATGACAACAGTGAAAAGAAAGAACGGTCTTTCTGGTTTTACTTCCCGATTTGAGAGTGAATATGATGCATTTGGTGCAGGTCATGGATGCAACAGTATTTCTGCTGGACTTGGTATGGCAGTTGCGCGGGATATTAAGGGCAGACAAGAACGAGTAGTTGCAGTTATCAGCAATTGGACAACTATGGCTGGTCAGGCATATGAGGCAATGAGCAATGCAGGATACTTAGACTCAAATATGGTTGTGATTTTGAATGATAGTCGTCACTCTTTACTTCCAAAAATTGAGGAAGGCCCAAAGACATCTGTCAATGCCCTATCTAGTACCCTGAGCAAGCTCCAGTCCAGTAAATCTTTCCGAAGATTTAGAGAAGCTGCCAAGGGTGTTACTAAACGAATTGGTATGCATGAGTTGGCAGCTAAAGTTGATGAATATGCTCGTGGTATGATAGGTCCCCAAGGTTCTACTCTTTTTGAGGAGCTTGGGTTGTACTACATAGGTCCAGTGGATGGACACAATATTGAGGATCTAATATGTGTTCTGCAAGAAGTTGCTTCCTTGGATTCAATGGGACCCGTTTTGGTACATGTGATAACTGATGAAAATCAGGGAGATGAAAACAATCAGAAAAGTGATATAACAGATAGGAAACAAGATGGTGGCATTTCTTTTGATCCTTTTAAATATGATTCGTCAGATAATGTTATTCGGCCTCAAACATATGGCGATTGCTTTGTAGAGACTTTGGTTGCAGAAGCAGAGAAAGACAAAGATATTGTGGTTGTTCATGCTGGAATAGCGATGGAGTCATCCCTTGAACCGTTTCAGGGGAAATTTCCAGATAGGATTTTTGATGTGGGAATGGCTGAGCAACATGCAGTCACCTTTGCTTCTGGTTTGGCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCCTTTCTGCAAAGAGCCTATGATCAGGTGATACACGATGTTGATCAACAGAGAATTCCAGTGCGCTTTGTCATTACAAGTGCAGGATTGGTAGGTTCTGATGGTCCCCTCCAATGTGGAGCATTTGATATAACCTTTATGTCATGCTTACCAAACATGATTGTCATGGCACCATCTGATGAGGTTGAACTCATGCACATGGTAGCTACTGCTACCCATATCAATGACCAACCAGTATGCTTTCGCTATCCAAGGGGTGCCCTGGTTGGGAAAGGCTACACTGGAGGTGATGGAATCCCCATCAAGATTGGAAGAGGAAGAATTCTTGTTGAGGGTAAAGATGTTGCTTTGCTGGGATACGGATCGATGGTTCAGAACTGCCTAAAGGCTCATTCACTCCTTGCCAAACTTGGCATTGAGGTGACTGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGACATCAAACTTCTGAGGCAGCTTTGTAAACATCACTCTTTTCTAATCACTGTCGAGGAAGGATCTATTGGAGGATTTGGTTCCCATGTTGCCGAGTTTATTGCAGTTAATGGACTGCTCGATGGAAGAATTAAGTGGCGACCAATAGTCTTACCTGACAGATATATTGAACATGCATCACCAAATGAACAGCTTGACCAAGCGGGGTTGAGTGGACACCACATTGCTGCCACGGCATTGAGTTTGCTAGGCCGTACACGGGAAGCTCTGCAGTTTATGTGTTCCTCCTGA 2151 0.4333 MAATPSSTYPFGVPFHSLGKRLDCSTSMFPLHVELSTISVSPRSTSKGLVDRVCAQFDNADYYWEKVPTPILDMVENPLCLKNFSIKELKQLAVEIRSDLSSIMLRTQISAKASMAVVELTVAIHYVFNAPVDKILWDVGDQTYAHKILTGRRPLMTTVKRKNGLSGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDIKGRQERVVAVISNWTTMAGQAYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGPKTSVNALSSTLSKLQSSKSFRRFREAAKGVTKRIGMHELAAKVDEYARGMIGPQGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPVLVHVITDENQGDENNQKSDITDRKQDGGISFDPFKYDSSDNVIRPQTYGDCFVETLVAEAEKDKDIVVVHAGIAMESSLEPFQGKFPDRIFDVGMAEQHAVTFASGLACGGLKPFCIIPSSFLQRAYDQVIHDVDQQRIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEVELMHMVATATHINDQPVCFRYPRGALVGKGYTGGDGIPIKIGRGRILVEGKDVALLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAEFIAVNGLLDGRIKWRPIVLPDRYIEHASPNEQLDQAGLSGHHIAATALSLLGRTREALQFMCSS* 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1175 716 Gene3D - 572 703 IPR009014 GO:0003824
Vra5g1175 716 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 16 714 IPR005477 GO:0008661|GO:0016114
Vra5g1175 716 CDD TPP_DXS 113 359 IPR005477 GO:0008661|GO:0016114
Vra5g1175 716 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 72 354 IPR005477 GO:0008661|GO:0016114
Vra5g1175 716 CDD TPP_PYR_DXS_TK_like 400 553 - -
Vra5g1175 716 Gene3D - 394 560 - -
Vra5g1175 716 MobiDBLite consensus disorder prediction 358 378 - -
Vra5g1175 716 Gene3D - 64 361 - -
Vra5g1175 716 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 16 714 - -
Vra5g1175 716 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 393 582 IPR029061 -
Vra5g1175 716 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 74 701 IPR005477 GO:0008661|GO:0016114
Vra5g1175 716 SMART Transket_pyr_3 394 559 IPR005475 -
Vra5g1175 716 Pfam Transketolase, pyrimidine binding domain 395 556 IPR005475 -
Vra5g1175 716 SUPERFAMILY TK C-terminal domain-like 567 703 IPR009014 GO:0003824
Vra5g1175 716 Pfam Transketolase, C-terminal domain 572 695 IPR033248 -
Vra5g1175 716 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 69 456 IPR029061 -
Vra5g1175 716 MobiDBLite consensus disorder prediction 355 378 - -
Vra5g1175 716 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 71 704 IPR005477 GO:0008661|GO:0016114
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1175 Vra-Chr5 18188761 18195814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1175 436 654 Acyl Lipid Metabolism Gene Families AT1G55510 23.529 1.08e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1175 K01662 - gmx:100793268 1264.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1175 5 18188761 18195814 Vra5g1175 5 18188761 18195814 ECH