Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1173 ATGACCGCAGTTCTGTGCGCTGACTTTGTAGCCCTAATCATAATTTATTACTACAAGTGCGTTCAACAACTTGGCCTAAATTTTTCGAAATTCCTTAATTTATTTTATGCAGCTTCAATGTCTTCCACTTCCTCCCTCCGCCTGATCCTCTGCACTCTCTTCTTCTCCTCACTCTTCCTCCGCCACTCTCTCGCCGACGTCGGCACCGCTGCACACTATGGCCCTCCCTTTTTGCCCACTGCATGCTACGGCAGAGACGCGTCACAGTTTCCGTCGAATAACTTCTTCGGTGCCGTCGGGGAGGGTTTATGGGACAATGGAGCAGCATGTGGGAGGCAGTATCAGGTGCGGTGCATCAGCGCTGCGGCTCGCGGAACTTGCATTCCTGGCCAGATGATTCAAATCAAGATCGTTGATCGAGCGCAGTCATCGGTTTCTAGGCCTTCTTTAGCTGGAACTACGTTGGTCCTCTCCTCGAAGGGCTTTCAGGTCATCGCCAACGCTTCTGCACCGTTCATTAACGTAGAATACCAACAGGTTTGA 543 0.5101 MTAVLCADFVALIIIYYYKCVQQLGLNFSKFLNLFYAASMSSTSSLRLILCTLFFSSLFLRHSLADVGTAAHYGPPFLPTACYGRDASQFPSNNFFGAVGEGLWDNGAACGRQYQVRCISAAARGTCIPGQMIQIKIVDRAQSSVSRPSLAGTTLVLSSKGFQVIANASAPFINVEYQQV* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1173 180 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 68 180 IPR007112 -
Vra5g1173 180 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 40 180 - -
Vra5g1173 180 Pfam Lytic transglycolase 102 177 IPR009009 -
Vra5g1173 180 SUPERFAMILY Barwin-like endoglucanases 64 180 IPR036908 -
Vra5g1173 180 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 40 180 - -
Vra5g1173 180 Gene3D - 66 180 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1173 Vra-Chr5 18162490 18163707 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1173 - - ccaj:109790666 212.231