Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1149 ATGGAGCAAACCCATCTTGTGGTGGCTTCAATACTCAATGGAACTTTGCTTCTTATTGCATTCGCTCTTATCCAAGGTAAGCCTATCACAGAAGCACAAGCAACTGCAAGAATCGGTGTTAATTATGGAACAGTCGCAAACAACCTTCCTCCACCTTCCGAGGTAGCGAAATTTCTCTCCAAATCCACCACAATCAACAGGGTCAGAATCTTCGACGCCAACCCTGAAATTCTACACGCTTTTGCCAACACCGGCATACAGGTAACCATAACTGTCCCCAACGACCAAATCCCCCAAATAACTAACTTAACCTTCGCACAACAATGGGTCAAAACCAACGTCCAACCGTTCCTCCCCGCCACCAAACTAATCCGAATCCTCGTCGGCAACGAAGTCCTCTCCACCGCCAACAAACTCCTCATCAGCAACCTCGTACCCGCCATGCAAACCCTTCACGTGGCCCTCGTCACAGCGTCGTTGGACAACAACGTTAAAGTCTCAACTCCACACTCTTTGGGTATTTTGTCAAACTCAAGCCCTCCCTCATCAGCCAAGTTCAGACAAGGCTACGACATGCACATTATCAAACCCATGCTTAGTTTTCTCAAAGATTCCGATGCACCCTTCATGGTTAACCCTTACCCTTTTTTCGGATCCTCTGCCACCAACCTTGATTACGCACTCTTTCGGACCAATTCGGGTGTATTTGACGACAACACCAATCTCCGATACACCAACATGTTGGACGCGCAACTCGATGCTGTTTATTCCGCGCTGAAGGTTTTGGGCTTTGAGGACGTTGAGATTGTCATTGCCGAAACGGGCTGGCCCTCACAAGGTGATCCGGCCCAAATTGGTGTTGACCGGAAGATTGCTTCTGAGTACAATGGAAATCTCATGAGACACGTCAATTCTGGGATTGGAACACCACTCATGCCTAACAGGACTTTCGATACATATATTTTTGCTTTGTTTGATGAAAATTTAAAGCCCGGCCCAACCTGTGAGAGGAATTTTGGGCTCTTCTGGCCCAATATGACTCTCGTTTATGACGTTCCAATAATGAGGAACGATGCAGCTGTAGTTGGTGATAGACATTATTATAAAGCTTTTTTCTCATTCATGATCGTGTTCAACTTCATTTGTACATTATGGGTTTAA 1161 0.4617 MEQTHLVVASILNGTLLLIAFALIQGKPITEAQATARIGVNYGTVANNLPPPSEVAKFLSKSTTINRVRIFDANPEILHAFANTGIQVTITVPNDQIPQITNLTFAQQWVKTNVQPFLPATKLIRILVGNEVLSTANKLLISNLVPAMQTLHVALVTASLDNNVKVSTPHSLGILSNSSPPSSAKFRQGYDMHIIKPMLSFLKDSDAPFMVNPYPFFGSSATNLDYALFRTNSGVFDDNTNLRYTNMLDAQLDAVYSALKVLGFEDVEIVIAETGWPSQGDPAQIGVDRKIASEYNGNLMRHVNSGIGTPLMPNRTFDTYIFALFDENLKPGPTCERNFGLFWPNMTLVYDVPIMRNDAAVVGDRHYYKAFFSFMIVFNFICTLWV* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1149 386 Pfam Glycosyl hydrolases family 17 38 352 IPR000490 GO:0004553|GO:0005975
Vra5g1149 386 ProSitePatterns Glycosyl hydrolases family 17 signature. 267 280 IPR000490 GO:0004553|GO:0005975
Vra5g1149 386 Gene3D Glycosidases 36 360 - -
Vra5g1149 386 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 30 360 IPR044965 GO:0004553|GO:0005975
Vra5g1149 386 PANTHER O-GLYCOSYL HYDROLASES FAMILY 17 PROTEIN 30 360 - -
Vra5g1149 386 SUPERFAMILY (Trans)glycosidases 38 352 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1149 Vra-Chr5 17959738 17962040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1149 33 358 Miscellaneous Gene Families AT3G46570 56.535 8.77e-120 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1149 - - ccaj:109788601 611.298