Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1146 ATGCAGTTAATATTGTGTGACTTGTTTATTTCTTTGGGTATCTTCGTTATCGTCTTTTTTCTTTCTCCGTTCAACATCCTATTAGGGTTTTCACTGTTGCACTCAGCTTTCAGCGCCGCTCATACATACCACTTCCGTTCACTTCATCAAGAGCCCATGCCCAGTATGCAAATGGCTCGTTTGGAGCCGCTTATGAACAAGATTGATTCGTCAGGTAGACAGATGGAAATGGGGATTTTGGTTCCTGTGTCCAGTGATATTGTTTCACAGCCTATGGGAACCTCAAATGAACATGTTGGGTTATTGAGAGCTGTGCCTGGTGAATCTAGGTCTCAGGGCATGCCCCTTTCGACCATGCAGAGTGGGCGAGTAGAAGCACAAGCGAATAATCCAGGAATGCATCAAATTCATTACCCTAACCAACAGTCCATGCAAATGGGGAGGCTTCCAAATAGCGCAGGGCCTCAGCAGCAGCAGCAGCCAGCAACTCCCAAGCGTAAGGCGCCAACAGAACTATCATCCAGTAGTTCCTTTAACAAGCGGGCTGTACAAATGGGAAACAGACCTTGGTTGCAGCAAGTACCTAATGCATCAAATAGAGGTTCTCCGCATATGCATATGCAATCCTCGTCAATTGCCTCCAGGACACAGCATTCGGCAGCTTCTAGCAAGAGAAAAACACAGTTTGATAGCACCTCCGGTAAAGCCAGTACACCTCGGTCTGTAAATTCTAAAAGTCAGAATACTCAAATAAAGCAGTCCTCCAAGGTTCAAACTGAATCATCTGAAAGTGTTAGGTCCAAGATGAGAGAGTCATTAGCTGCTGCTCTGGCCTTGGTTTCTCAACAAGGTAAACCTCAGATCCCAAACAATAATACACCAACTGATGGTGCTACCAATACTCAAGGTAAATTAGAGAACAACTCTCAATGTTCTGGATCAACACCTACATCCATCAATGGTCCACTGGAGCAAAGTATTTCTCAATCAGTTAGTTCCTCTTTTGCTGAGGCTGATTCAGTTGGGCGGGTGGAGACAGAGCACATGCAGAATACATCATTCAAAGAAGATTTTCCAGAAAAATACAAGGACTATGAAGCAGGATCCACAAATGCATCAAACAGTGAAAGCATACTGACTTCTATGCAAGTCTTGAACTGTGATAAGCAAGATTTCCAGTCATGTTACACTTTGACTACTGATGATGTTCCTTTTAGTGACAGTTTCTTTATGAAAGATGATCTTTTGCAGGGAAATGGTCTTTCCTGGGTATTATCTGATATGGTTGACGTTGGAAATCAAAAGGAAAGTCAAACTAATATAGAGCAGAGATCAGAACCTGAGGAAACATGTCAAGGTTGCAAGGTGGAGGTCCCTTTACCTGAACTTTTGGCATCAAAAATCGAAGCAGAACTGTTCAAACTGTTTGGAGGTGTGAATAAGAAGTACAAAGAGAAAGGGAGGTCTCTTTTATTTAATTTAAAAGATCGCAATAACCCTGAACTTAGAGAAAGGGTTATGTTTGGTCAAATTCCTCCTGAACAATTATGTTCCATGACTGCAGAGGAACTTGCTTCAAAAGAGCTCTCTGAGTGGCGTATAGCCAAGGCTGAGGAGCTTGCTCAAATGGTGGTTTTACCTAATTCAGATGTTGATTTTAGGCGTTTGGTCAAGAAGACTCATAAAGGTGAATTTCAAGTGGAAGTTGAACATGAAGACAATGTATCTGTTGAGGAGGTTTCCGGTGGCACAACCTCAGTGGCTAGAAGCCAAACAGAAAAAAAGGATGTGGAAGGCACTTCTTCAAAACCTGATGTGAACATTGATGCTGAGAAGCGCAATTTACAGAAGGATGATACATTTTCCATTACCATTTCATCCACCGACGGCACTGATCCAATGCAGGGCCTTATGACTGATGATGCCTTGAAGGACCCTGATTTTCTTCCACCAATTGTCTCTCTTGATGAATTCATGGAATCTCTTCATTCTGAGCCACCTTTTGAAAATCTAGAATCTGGGAAAGTGACACCTGCTTTAGACAAGGATGATTTAGGGGTTGGATTTAAATCAAAATCTTCTGATTTAACTTCAAATGAGCAAGCTGTTGTCACTCCTGACAAGTTTCAAAGCACACGTGTAAATTCAGATGCTGAAAAGGAGAAAAAGGCTGATGCTGAATCTGGGACCATTTCTTCTGATACGGGATATAGTGGGAGTCAAGCTGACATGAAGTCAACTGATGGTCGTACCAAGGAAAGGTCAATCGAAAATGTGAAGCCTGCACCCAGCGATACCGAGTTCAAAGGCAATCAGTCTCATGCCGAAGGGAGATACGGTAATGATAATAAATATATGAAGGATGCAGTCCCCACTAAGGGTGAATGCCTCTGGGAGGGAATGCTTCAACCCAATATATCTACCACTCAGTCTGTCATAAGCTTCTATAAGAGTGGCGAGAAAACTGCTGCTAAAGACTGGCCTGGGTTTCTCGAGATCAAGGGAAGGGTTCGACTAGATGCATTTGAGAAATTTCTTCAAGATCTTCGATTTACTAGGAGTCGTGCAATCATGGTTTCACATTTCCTTTCGAAAGAGTTGGACGAGCAATCAACTCTACGCGAGGTGGCGGACTCGTATATTTCGGACGAGAGAGTAGGATTTGCAGAGCCTGTGCTTGGAGTAGAACTTTACTTTTGCCCACCTCATAAGAAAACAGTTGAAATGCTGAGCAACATACTTCCAAAGGAACAAATTGAGGCAGTTAATTCTATTGATAATGGTCTAATTGGTATTATTGTATGGAGAAAAACTAATATAACGTCTATATCACCCACCACTGCTACTCACCACAAACACAGCTCTAAAAGACAACAATACTTCAGTAGGAGACAGCAAGATATAAATGTGAATGCCAATTCCACCCATAAAGCAGTACCCCCTACGGACCTTAAGACCATTGAGAATGAGAATGATGACGATGATGATGTTCCTCCTGGATTTGGGCCACCTGCTGCCCGAGTCGAGGATGACCTGCCGGAATTTAATTTCTCCAGTAGTTCGATTCCACCACACTTAGCCCAAAAACCAAAGGAACTATCAAATATGGTTACATCACACTCGGTTAACCCAGCCCCACCACCTGCACGCCCTGTAGAACAAATGAGAGAACTTGTATACAAATATGGGCAAAACAAACCAAGTGCACCATCAGTAAACTGGCAGGATAAATTTGGGGGGACAATTCAACCCTGGAATGATGATGATGATGACATACCTGAATGGCAGCCCCAAACATCCCAGAATCAGTTTCTTCCTCAACAGACAATGCATAACTTTCATCTTCGACCGCACATTATGAATCAATCATTACCGGGTTCACAACAACAGCCTATTATGACACCACAATATCTGCAACCCCCGGTGAATGTGACTCATACCCAAAGAAATTTTGACCCTCAATGGGTTCCTTCTTCCCAGGCTAGCAACCTACCGCCAAGAGGTGGACCTCCCTACGGAGCGCCTTCGCAAGGCACTACCTGGCCTCAAAATGTGTCTAGAAGTAGGGGATTTTAG 3576 0.4323 MQLILCDLFISLGIFVIVFFLSPFNILLGFSLLHSAFSAAHTYHFRSLHQEPMPSMQMARLEPLMNKIDSSGRQMEMGILVPVSSDIVSQPMGTSNEHVGLLRAVPGESRSQGMPLSTMQSGRVEAQANNPGMHQIHYPNQQSMQMGRLPNSAGPQQQQQPATPKRKAPTELSSSSSFNKRAVQMGNRPWLQQVPNASNRGSPHMHMQSSSIASRTQHSAASSKRKTQFDSTSGKASTPRSVNSKSQNTQIKQSSKVQTESSESVRSKMRESLAAALALVSQQGKPQIPNNNTPTDGATNTQGKLENNSQCSGSTPTSINGPLEQSISQSVSSSFAEADSVGRVETEHMQNTSFKEDFPEKYKDYEAGSTNASNSESILTSMQVLNCDKQDFQSCYTLTTDDVPFSDSFFMKDDLLQGNGLSWVLSDMVDVGNQKESQTNIEQRSEPEETCQGCKVEVPLPELLASKIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMTAEELASKELSEWRIAKAEELAQMVVLPNSDVDFRRLVKKTHKGEFQVEVEHEDNVSVEEVSGGTTSVARSQTEKKDVEGTSSKPDVNIDAEKRNLQKDDTFSITISSTDGTDPMQGLMTDDALKDPDFLPPIVSLDEFMESLHSEPPFENLESGKVTPALDKDDLGVGFKSKSSDLTSNEQAVVTPDKFQSTRVNSDAEKEKKADAESGTISSDTGYSGSQADMKSTDGRTKERSIENVKPAPSDTEFKGNQSHAEGRYGNDNKYMKDAVPTKGECLWEGMLQPNISTTQSVISFYKSGEKTAAKDWPGFLEIKGRVRLDAFEKFLQDLRFTRSRAIMVSHFLSKELDEQSTLREVADSYISDERVGFAEPVLGVELYFCPPHKKTVEMLSNILPKEQIEAVNSIDNGLIGIIVWRKTNITSISPTTATHHKHSSKRQQYFSRRQQDINVNANSTHKAVPPTDLKTIENENDDDDDVPPGFGPPAARVEDDLPEFNFSSSSIPPHLAQKPKELSNMVTSHSVNPAPPPARPVEQMRELVYKYGQNKPSAPSVNWQDKFGGTIQPWNDDDDDIPEWQPQTSQNQFLPQQTMHNFHLRPHIMNQSLPGSQQQPIMTPQYLQPPVNVTHTQRNFDPQWVPSSQASNLPPRGGPPYGAPSQGTTWPQNVSRSRGF* 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1146 1191 MobiDBLite consensus disorder prediction 1176 1191 - -
Vra5g1146 1191 MobiDBLite consensus disorder prediction 691 712 - -
Vra5g1146 1191 SMART mid_6 427 535 IPR003618 GO:0006351
Vra5g1146 1191 MobiDBLite consensus disorder prediction 691 786 - -
Vra5g1146 1191 MobiDBLite consensus disorder prediction 713 728 - -
Vra5g1146 1191 MobiDBLite consensus disorder prediction 1147 1191 - -
Vra5g1146 1191 MobiDBLite consensus disorder prediction 144 183 - -
Vra5g1146 1191 MobiDBLite consensus disorder prediction 283 339 - -
Vra5g1146 1191 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 117 1166 - -
Vra5g1146 1191 PANTHER SPOC DOMAIN / TRANSCRIPTION ELONGATION FACTOR S-II PROTEIN 117 1166 - -
Vra5g1146 1191 MobiDBLite consensus disorder prediction 619 634 - -
Vra5g1146 1191 MobiDBLite consensus disorder prediction 281 357 - -
Vra5g1146 1191 MobiDBLite consensus disorder prediction 591 618 - -
Vra5g1146 1191 Gene3D - 434 527 IPR036575 GO:0006351
Vra5g1146 1191 MobiDBLite consensus disorder prediction 189 262 - -
Vra5g1146 1191 ProSiteProfiles TFIIS central domain profile. 443 552 IPR003618 GO:0006351
Vra5g1146 1191 MobiDBLite consensus disorder prediction 341 357 - -
Vra5g1146 1191 Pfam SPOC domain 793 935 IPR012921 -
Vra5g1146 1191 MobiDBLite consensus disorder prediction 144 269 - -
Vra5g1146 1191 MobiDBLite consensus disorder prediction 1147 1165 - -
Vra5g1146 1191 MobiDBLite consensus disorder prediction 729 745 - -
Vra5g1146 1191 MobiDBLite consensus disorder prediction 972 1008 - -
Vra5g1146 1191 SUPERFAMILY Elongation factor TFIIS domain 2 460 528 IPR036575 GO:0006351
Vra5g1146 1191 MobiDBLite consensus disorder prediction 746 760 - -
Vra5g1146 1191 MobiDBLite consensus disorder prediction 575 643 - -
Vra5g1146 1191 Pfam Transcription factor S-II (TFIIS), central domain 449 540 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1146 Vra-Chr5 17933020 17939206 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1146 - - gsj:114415028 1786.16