Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1123 ATGGCCATTCTCCACTGCACTCCACTTCCGTTTCTTTCCCTCAGAACCACTCTCTATTCCGCTAAGACCACGTTAACCTTAACACTCACAAACCCAACAACAACAAAAACAAGAAACCCGTTGTTCCTGGCGATGAACACGCTCGCGAAATCCAAAACCGTGTCGTCTTCAGGCTCTTCTTCGTCAACGTACGAGGTGCCTGAGCTAGATGCTAACGACATGGACCGCGTTGCGGAGAACGCTTTTCGAAGGTACACGTGGAACACCAAGAGGAGTGGCAAAGGAACGGCCATTGTATGGTTCAGGAATGATCTCAGAGTTTTGGATAACGAAGCTCTCTACAAGGCATGGCTTTCCTCCGAAACCGTTTTACCTGTCTACTGCGTTGACCCTCGACTCTTTGCCACTACTTATCATTTCGGCTTTCCCAAAACCGGTGCATTGAGAGCGCAATTTCTCATTGAATGTGTGGTGGACTTGAGGAAGAATTTGATGAAAAAAGGGCTTAATTTGCTTGTACAACATGGGAAGCCTGAGGAGATTCTTCCTTCTCTTGCCAAAGCATTTCAAGCTCACACAGTGTATGCACAGAAAGAAACGTGCAGTGAGGAGCTGAATGTTGAGCGGTTAGTCATGGAAGGTCTTAAACAAGTTGCGACATCATCAGGAGAATCGAGTGGTGTCACAGTTTCAAACAACATCCTTAAATTGCAATTAGTTTGGGGTACCACCATGTACCATCTTGATGACCTCCCTTTTGATGCCACTTCTTTGCCAGATATGTATACTCAATTTCGCAAGATTATTGAAGCGAAATGTACCATACGCTCATGCATCAAACTACCACCATCTCTTGGACCACCTCCCTTGATTGAGGATTGGGGATGCCTTCCTTCATTAGAACAGCTTGGACTTTGCTCACAGAATGTTATCAAGGGAATGAAGTTTGTGGGGGGTGAAACTGCAGGATTGAGCAGAGTATATGAATACTTCTGGAAGAAGGATTTGCTGAAGGTGTATAAAGAGACCAGGAATGGGATGTTAGGGCCTGATTATTCTACCAAATTCTCACCATGGCTTGCCTCAGGAAGTTTATCTCCTCGTTTCATATATGAAGAGGTAAAGAGATATGAAAACGAAAGACTAGCAAATAGTTCTACCTACTGGGTTTTGTTTGAGTTGATATGGAGGGATTACTTTAGGTTTCTGTCAGTGAAATATGGGAATTCGCTTTTCCATCTAGGTGGCCCTAGGAAAGTTCATCGCAACTGGAGCCAAGACAAGAATTTGTTTGAATCCTGGAGAGATGGTTGTACCGGGTATCCTCTCATAGATGCCAACATGAAAGAACTATCGACTACAGGGTTTATGTCTAATCGAGGACGACAGATTGTATGTTCCTTTCTTGTTCGTGATATGGGCATAGATTGGCGCATGGGAGCAGAATGGTTTGAGACGTGCCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTACGGATCAGGAGTTGGGAATGATCCCAGAGAAGATCGGTATTTCAGCATCCCGAAACAAGCACAAACATATGACCCTGAAGGTGAGTATGTTGCATACTGGTTGCCACAATTGCAAAAAATCCAAAAGGAGAAAAGGAACTTCCCTGGAAATATGTACATTCCTCAAATTGTGCCTCTCAAGTTTGGAACAATTAGTGGTGCAAGAAGATTCAACCATAAAGGAAATGAAAGAAAATGGAACTTTCAAAAGAAATCATAG 1764 0.4348 MAILHCTPLPFLSLRTTLYSAKTTLTLTLTNPTTTKTRNPLFLAMNTLAKSKTVSSSGSSSSTYEVPELDANDMDRVAENAFRRYTWNTKRSGKGTAIVWFRNDLRVLDNEALYKAWLSSETVLPVYCVDPRLFATTYHFGFPKTGALRAQFLIECVVDLRKNLMKKGLNLLVQHGKPEEILPSLAKAFQAHTVYAQKETCSEELNVERLVMEGLKQVATSSGESSGVTVSNNILKLQLVWGTTMYHLDDLPFDATSLPDMYTQFRKIIEAKCTIRSCIKLPPSLGPPPLIEDWGCLPSLEQLGLCSQNVIKGMKFVGGETAGLSRVYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRFIYEEVKRYENERLANSSTYWVLFELIWRDYFRFLSVKYGNSLFHLGGPRKVHRNWSQDKNLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLQKIQKEKRNFPGNMYIPQIVPLKFGTISGARRFNHKGNERKWNFQKKS* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1123 587 Pfam FAD binding domain of DNA photolyase 392 548 IPR005101 -
Vra5g1123 587 Gene3D - 243 412 - -
Vra5g1123 587 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 413 567 - -
Vra5g1123 587 Pfam DNA photolyase 97 277 IPR006050 -
Vra5g1123 587 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 312 548 IPR036134 -
Vra5g1123 587 Gene3D HUPs 61 242 IPR014729 -
Vra5g1123 587 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 95 228 IPR006050 -
Vra5g1123 587 TIGRFAM crypto_DASH: cryptochrome, DASH family 96 538 IPR014133 GO:0003913|GO:0006281
Vra5g1123 587 PANTHER CRYPTOCHROME DASH 88 563 - -
Vra5g1123 587 PRINTS DNA photolyase signature 439 455 IPR002081 -
Vra5g1123 587 PRINTS DNA photolyase signature 459 477 IPR002081 -
Vra5g1123 587 PRINTS DNA photolyase signature 498 512 IPR002081 -
Vra5g1123 587 PANTHER CRYPTOCHROME 88 563 IPR002081 -
Vra5g1123 587 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 94 293 IPR036155 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1123 Vra-Chr5 17679692 17683745 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1123 K25656 - gmx:100783312 1019.61