Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1117 ATGGAAGGGTTGTCGTCTTCAATGGCGATTGCGCAGAAAACATGGGAGCTCGAGAACAACATCATCCCCATGGACACTCCGGGAGCCGCCTCATCCTCCTCCGCCGCAACCGCCACCAACGCCGACGATTCTATATTCTACTACGACGAGGCCGGGCAGAATGAGTTCCAGCGCGACAAGCCCTGGGCCAATGACCCTCACTACTTCAAGCGCGTCAAGATCTCCGCACTCGCGCTACTCAAGATGGTCGTCCACGCACGCTCCGGCGGAACTATCGAGGTCATGGGCCTCATGCAGGGAAAGACCGATGCCGACGCCATCATCGTCATGGACGCCTTCGCTCTCCCCGTTGAAGGCACGGAAACGCGCGTTAATGCTCAGGCAGATGCTTACGAGTATATGGTCGATTATTCCCAGACAAACAAACAGGCTGGAAGGTTGGAAAATGTTGTGGGATGGTATCACTCTCATCCTGGGTATGGGTGCTGGCTGTCGGGGATCGATGTTTCGACGCAGATGCTGAATCAGCAGTTTCAGGAGCCGTTTCTGGCGGTTGTGATTGATCCCACGAGGACTGTTTCGGCTGGGAAGGTTGAGATTGGGGCTTTTAGGACTTACCCTGACGGGTATAAGCCTCCGGATGAGCCTATTTCTGAGTATCAAACTATCCCTCTCAATAAGATTGAGGACTTTGGTGTCCACTGTAAACAGTATTATGCCTTGGATATCACTTACTTTAAGTCATCTCTTGATTCACATCTCTTGGATCTTCTGTGGAACAAGTATTGGGTGAATACATTGTCGTCTTCTCCTCTGTTGGGTAATGGAGATTATGTTGCTGGACAAATCTCTGATTTAGCTGAAAAGCTAGAACAAGCAGAGAATCAGTTGGCACACTCACGCTTTGGGCCACTAATAGCACCGACACCTAGAAAGAAAGAGGAAGAATCTCCTCTTGCTAAAATTACTCGTGACAGTGCTAAAATAACTGTGGAGCAGGTGCATGGTTTGATGTCACAGGTCATCAAGGACATTTTGTTTAACTCCGTCCATCAAGCAAATAGAAGTAGCACAGAACCATCTGGTCCTGAACCAATGATTGAAAGCTGA 1110 0.4955 MEGLSSSMAIAQKTWELENNIIPMDTPGAASSSSAATATNADDSIFYYDEAGQNEFQRDKPWANDPHYFKRVKISALALLKMVVHARSGGTIEVMGLMQGKTDADAIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPDGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYALDITYFKSSLDSHLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGPLIAPTPRKKEEESPLAKITRDSAKITVEQVHGLMSQVIKDILFNSVHQANRSSTEPSGPEPMIES* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1117 369 Gene3D Cytidine Deaminase, domain 2 4 274 - -
Vra5g1117 369 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 35 364 - -
Vra5g1117 369 Pfam Cop9 signalosome subunit 5 C-terminal domain 268 348 IPR040961 -
Vra5g1117 369 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 69 180 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vra5g1117 369 CDD MPN_RPN11_CSN5 61 333 - -
Vra5g1117 369 SMART pad1_6 71 208 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vra5g1117 369 SUPERFAMILY JAB1/MPN domain 71 209 - -
Vra5g1117 369 ProSiteProfiles MPN domain profile. 72 209 IPR037518 -
Vra5g1117 369 PANTHER BNAC07G13420D PROTEIN 35 364 IPR037740 GO:0004222|GO:0008180
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1117 Vra-Chr5 17618670 17627010 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1117 K09613 - gmx:100817371 719.539