Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1095 ATGGATCAGAAAGTCGATTTCAGCGCTCCCCATTCCATGGGAACCACTATCATCGGCGTTACTTACAAAGACGGTGTCGTTTTGGGAGCCGATTCTCGAACCAGCACTGGAGTGTATGTTGCCAACCGGGCATCAGACAAAATTACACAGCTCACTGATAATGTCTATGTCTGTCGTTCTGGATCGGCTGCAGATTCTCAGATTGTATCTGACTATGTGCGTTACTTCCTCCATCAACACACGATACAACTTGGACAACCTGCAACAGTTAAAGTTGCTGCAAACCTTGTCCGGCTTCTCTCATATAACAACAAGAATTTCTTAGAGACTGGGTTAATTGTTGGAGGTTGGGATAAATATGAAGGTGGACAAATTTTTGGCGTCCCTCTGGGTGGAACAATAGTACAGCAACCTTTTGCTATTGGAGGATCTGGCTCCAGTTACTTGTATGGTTTTTTTGACCAAGCCTGGAAAGAGGGAATGAGCAAGGAGGAAGCTGAGGATTTAGTTAAAAAGGCAGTTTCACTGGCTATTGCTCGTGATGGAGCCAGTGGTGGGGTGGTCCGAACCGTCATAATAAACTCAGAGGGAGTGACCAGGAATTTCTACCCTGGCGACCAACTTCCATTATGGCATGAAGAACTGGAGCCTCATAACTCTTTGCTTGACATTCTTGGTGCCCCAGAGCCGATGAGCATGTGA 702 0.463 MDQKVDFSAPHSMGTTIIGVTYKDGVVLGADSRTSTGVYVANRASDKITQLTDNVYVCRSGSAADSQIVSDYVRYFLHQHTIQLGQPATVKVAANLVRLLSYNNKNFLETGLIVGGWDKYEGGQIFGVPLGGTIVQQPFAIGGSGSSYLYGFFDQAWKEGMSKEEAEDLVKKAVSLAIARDGASGGVVRTVIINSEGVTRNFYPGDQLPLWHEELEPHNSLLDILGAPEPMSM* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1095 233 PRINTS Proteasome component signature 22 37 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vra5g1095 233 PRINTS Proteasome component signature 143 154 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vra5g1095 233 PRINTS Proteasome component signature 154 165 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vra5g1095 233 PRINTS Proteasome component signature 179 190 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vra5g1095 233 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 15 218 IPR029055 -
Vra5g1095 233 ProSiteProfiles Proteasome beta-type subunit profile. 14 193 IPR023333 -
Vra5g1095 233 CDD proteasome_beta_type_6 15 202 - -
Vra5g1095 233 Pfam Proteasome subunit 13 193 IPR001353 GO:0005839|GO:0051603
Vra5g1095 233 ProSitePatterns Proteasome beta-type subunits signature. 18 65 IPR016050 GO:0005839|GO:0051603
Vra5g1095 233 PANTHER PROTEASOME SUBUNIT BETA 7 228 - -
Vra5g1095 233 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 7 228 - -
Vra5g1095 233 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 6 204 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1095 Vra-Chr5 17434602 17438859 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1095 K02738 - gmx:100793551 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1095 5 17434602 17438859 Vra5g1095 5 17434602 17438859 ECH