Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1089 ATGTCTTCCTCTTATCTTCCTGCCACTACTGAGTCAATTGTTCTGGCAAACGAGGCCGCAAGCCCAACTGAGGCCATCTCCATTCTTTATCGGGTACTTGATGATCCTTCTTCTTCACCAGATGCTCTGCGTATGAAAGAGCAAGCAATCACACTCCTCACTAAGCATCTCACAGAAGAGAATAGGGGAGAGGATCTCCGCAGCCTTCTCACTCAGTTGAGGCCATTCTTCTCCTTGATACCAAAGGCAAAAACTGCAAAGATTGTTAGGGGAATTATTGACTCAGTTGCTAAAATACCTGGGACGTCTGATCTCCAAATTGCACTCTGTAAAGAAATGGTGCAATGGACTCGTGCTGAGAAGCGTACCTTTCTGAGACAACGTGTTGAGGCGAGACTTGCAGCACTTTTGATGGAAAATAAGGAGTATTCTGAAGCTTTGACTCTTCTCTCTGGCTTGGTCAAAGAGGTTAGGAGATTAGATGACAAACTTCTTCTAGTTGACATAGACTTGCTGGAGAGCAAGCTCCATTTCTCCTTAAGAAACCTTCCTAAGGCAAAAGCTGCTCTCACGGCTGCAAGAACAGCTGCAAATGCTATTTATGTGCCTCCAGCTCAACAAGGGGCCATAGATCTGCAGAGTGGAATACTTCATGCTGAGGAGAAGGATTATAAAACTGCTTATAGCTATTTCTTTGAAGCTTTCGAATCATTCAATGCTCTTGATGACCCCAAGGCTGTATTTAGCCTGAAATATATGTTGCTGTGTAAGATCATGGTGAATCAAGCTGATGACGTGGGAGGAATTATTTCCTCTAAAGCAGGACTGCAATATCTTGGGCCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCACACTCTAAGCGGTCCCTTAGGTTGTTTGAAATTGCTCTGCGGGACTACAAGGCACAGTTGGAGGAAGACCCAATTGTCCACAGGCACCTTTCATCCTTGTACGACACCCTACTGGAGCAGAATCTTTGCAGATTGATTGAACCTTTCTCAAGGGTTGAGATTGCACATATTGCTGAACTTATTGAACTTCCCGTTGATCATGTGGAGCGAAAGTTGTCTCAGATGATTTTGGACAAGAAATTTGCTGGAACATTGGATCAAGGTGCTGGATGCCTTGTCATATTTGATGATCCCAAGACTGATGCTATATACCCTGCAACTCTAGAGACCATTTCCAATATTGGGAAAGTTGTCGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGA 1269 0.4413 MSSSYLPATTESIVLANEAASPTEAISILYRVLDDPSSSPDALRMKEQAITLLTKHLTEENRGEDLRSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMENKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALDDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYLGPDLDAMKAVADAHSKRSLRLFEIALRDYKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIELPVDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNIGKVVDSLYVRSAKIMA* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1089 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11-LIKE PROTEIN 2 422 - -
Vra5g1089 422 Pfam 26S proteasome subunit RPN6 C-terminal helix domain 393 418 IPR040780 -
Vra5g1089 422 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 2 422 - -
Vra5g1089 422 SUPERFAMILY TPR-like 129 323 IPR011990 GO:0005515
Vra5g1089 422 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 320 403 - -
Vra5g1089 422 Coils Coil 126 146 - -
Vra5g1089 422 SMART PINT_4 320 403 IPR000717 -
Vra5g1089 422 Pfam PCI domain 285 386 IPR000717 -
Vra5g1089 422 SUPERFAMILY "Winged helix" DNA-binding domain 314 396 IPR036390 -
Vra5g1089 422 Pfam 26S proteasome regulatory subunit RPN6 N-terminal domain 20 128 IPR040773 -
Vra5g1089 422 ProSiteProfiles PCI domain profile. 223 391 IPR000717 -
Vra5g1089 422 Gene3D - 46 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1089 Vra-Chr5 17398649 17402187 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1089 K03036 - gmx:100796188 755.747