Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1087 ATGGGGATAGCAGAAGTGTGCTCGAGGTTCATTGGGGACTTTTTACAAACATTTAAAAGCTCGGCACAGAGCTCAGTGTCTTGTGACGTTGATGGGAGTGAGCATGCATGGAAAGGTGAGAGGATGGTGAAGGTTGATGAGAAGATGGTGGGTGCCCTTGTAACAGTTTTTGGGATGGAAAGCAATGGAAGGATAAAGAAGGAGAGTGCAAGGGAAGTTGTGGAGAAGCTTGGTTTGGGTTCGAGAAGAGGGTTTGAGCTGGGTGAGTTGATGGATGATGAAGTGGCTGTGGAAGAAGTTCTTGGTGAGTTGGAAGACATGTCAAAGCGCAGTGAGTTGCTGCATGAAGCTTTCAAAATCTTTGATGAAGATGGAGATGGGTACATAGATGCAATGGAGTTGAAGAGGGTGCTTGATTGCTTGGGTTTGGATAAGGGTTGGGATATGAACGCCATTGAAAAGATGGTGAAGGTTGCAGATTTGAACTTTGATGGCAAGGTTGATTTTGCTGAGTTTGAATTCATGATGATGGGGTAG 537 0.4525 MGIAEVCSRFIGDFLQTFKSSAQSSVSCDVDGSEHAWKGERMVKVDEKMVGALVTVFGMESNGRIKKESAREVVEKLGLGSRRGFELGELMDDEVAVEEVLGELEDMSKRSELLHEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMNAIEKMVKVADLNFDGKVDFAEFEFMMMG* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1087 178 ProSitePatterns EF-hand calcium-binding domain. 122 134 IPR018247 -
Vra5g1087 178 ProSiteProfiles EF-hand calcium-binding domain profile. 109 144 IPR002048 GO:0005509
Vra5g1087 178 SMART efh_1 113 141 IPR002048 GO:0005509
Vra5g1087 178 SMART efh_1 151 178 IPR002048 GO:0005509
Vra5g1087 178 Gene3D - 14 178 - -
Vra5g1087 178 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 100 177 - -
Vra5g1087 178 SUPERFAMILY EF-hand 52 177 IPR011992 -
Vra5g1087 178 CDD EFh 114 177 IPR002048 GO:0005509
Vra5g1087 178 PANTHER CALCIUM-BINDING PROTEIN CML42 100 177 - -
Vra5g1087 178 Pfam EF-hand domain pair 113 176 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1087 Vra-Chr5 17385065 17385832 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1087 114 176 EF-hand Containing Proteins AT4G20780 57.143 1.11e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1087 - - var:108321834 301.597