Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1083 ATGGGAGTAAGAGAATTAGAAAACCGTTTTGTGGCAACCCTGAGAACCTGCTCCAAAATCGCGGAACTGAAGAAGCTTCACGCTCACATCGTTAAGTTATCACTGTCACAGAGCAACTTTTTGGCCACCAAAATGTTGGATCTGTGCGACAACTTGGGTCACGTGGATTACGCGACCTTGATATTCCAAAATCTAGAGGACCCAAACGTGTTCTCTTACAACGCAATAATCAGAACCTGCACTCATAATCACAGATATTCTCTGGCAATTTATGTGTTCAAAGAAATGCTGAGACATGCAACGAAATCATCACTGCCAGACAAATTCACGATCCCTTTTGTGATAAAGTCGTGTGCAGGCATTCGGTGTCGCCGCCTCGGGCAGCAAGTTCACGCGCAAGTGTGCAAGTTTGGACCCAAGTCGCACGCAATAACAGATAACGCGCTGATTGATATGTACACGAAGTCTGGCGATTTGAAAGGTGCATACCAAGTGTTTGAGGAAATGACTGTCAGAGACGCAGTTTCGTGGAATAGTTTAATCTCGGGGCACGCGAGGCTGGGGCAGATGAAGAGTGCGCGGGAAGCGTTTAATGAAATGCCTTGTAGGACAATCGTGTCTTGGACGACTATGATTAATGGGTATACTAAAGCAGGGTGTTTTGTGGATGCGTTAGAGATTTTTCGCGGGATGCAAGAGGTGGGTATTGAGCCTGATGAGATAAGTGTTATATCTGTTCTGCCGGCGTGTGCACAGCTTGGGGCTCTTGAAGTTGGGAAGTGGATTCACAAATACTCGGAGAAAAGTGGGTTTTTGAAGAAGACTGCTGTGTGTAATGCACTTATTGAAATGTATGGTAAGTGTGGCTGCATTGATGAAGCTATGGGGTTGTTTTATCAGATGGTTGAGAAGGATGTGATTTGTTGGAGTACCATGATTGGGGGACTGGCGAATCATGGAAAAGGGTATGAGGCAATTCGAGTTTTTGAAGATATGCAGAATGCAGGAGTGGCTCCTAATGGGGTAACATTTGTTGGTGTTTTGTCAGCTTGTGTTCATGCAGGGTTGTGGAAGGAGGGGTTGAGATATTTTGATGTTATGAGGGTGGATAATCATTTAGAGCCAGAGATTGAGCACTATGGTTGTCTAGTTGATCTTCTAGGACGTTGGGGACGGCTTCATGAGGCTCTTGACACAATAATGAAGATGCCAATGCAACCAGACTCCAGGATATGGAACTCTTTGTTGAGCTCTTGCAGGATTCATCGCAATCTTGAGATTGCTGTTGTTGCCATGGAACAGCTTTTGGAGCTTGAGCCTGAAGAGTCTGGAAACTATGTGTTGCTTGCTAACATATATGCAGAACTTGGGAAGTGGGAAGGCGTTTCAAATGTTAGGAAACTCATCAGAAGCAAGAGGATAAAGAAAACACCGGGGAGTAGCTTGATTGAGGTTGATAATATGGTTCAGGAATTTGTATCAGGTGACGATACAAAGCCCTTTTCACAAGATGTTTTCACGATCCTAGAAGGGCTGACTTTACACCAAACTACATCCAGTGACTTCATGGAGTTTGTGGAAGAAGAAGCAGGCCAAGGCCAAGTTTACAGAAAATTACCACTTTTTAATCAATTTCTATAA 1641 0.443 MGVRELENRFVATLRTCSKIAELKKLHAHIVKLSLSQSNFLATKMLDLCDNLGHVDYATLIFQNLEDPNVFSYNAIIRTCTHNHRYSLAIYVFKEMLRHATKSSLPDKFTIPFVIKSCAGIRCRRLGQQVHAQVCKFGPKSHAITDNALIDMYTKSGDLKGAYQVFEEMTVRDAVSWNSLISGHARLGQMKSAREAFNEMPCRTIVSWTTMINGYTKAGCFVDALEIFRGMQEVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLKKTAVCNALIEMYGKCGCIDEAMGLFYQMVEKDVICWSTMIGGLANHGKGYEAIRVFEDMQNAGVAPNGVTFVGVLSACVHAGLWKEGLRYFDVMRVDNHLEPEIEHYGCLVDLLGRWGRLHEALDTIMKMPMQPDSRIWNSLLSSCRIHRNLEIAVVAMEQLLELEPEESGNYVLLANIYAELGKWEGVSNVRKLIRSKRIKKTPGSSLIEVDNMVQEFVSGDDTKPFSQDVFTILEGLTLHQTTSSDFMEFVEEEAGQGQVYRKLPLFNQFL* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1083 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 203 IPR002885 -
Vra5g1083 546 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 3 523 - -
Vra5g1083 546 Pfam E motif 422 484 IPR046848 -
Vra5g1083 546 Pfam PPR repeat 175 202 IPR002885 -
Vra5g1083 546 Pfam PPR repeat 71 98 IPR002885 -
Vra5g1083 546 Pfam PPR repeat 379 403 IPR002885 -
Vra5g1083 546 Pfam PPR repeat 147 170 IPR002885 -
Vra5g1083 546 Pfam PPR repeat family 304 352 IPR002885 -
Vra5g1083 546 Pfam PPR repeat family 204 251 IPR002885 -
Vra5g1083 546 Gene3D Tetratricopeptide repeat domain 258 370 IPR011990 GO:0005515
Vra5g1083 546 Gene3D Tetratricopeptide repeat domain 371 505 IPR011990 GO:0005515
Vra5g1083 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Vra5g1083 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 304 IPR002885 -
Vra5g1083 546 SUPERFAMILY TPR-like 276 463 IPR011990 GO:0005515
Vra5g1083 546 TIGRFAM PPR: pentatricopeptide repeat domain 277 306 IPR002885 -
Vra5g1083 546 TIGRFAM PPR: pentatricopeptide repeat domain 307 340 IPR002885 -
Vra5g1083 546 TIGRFAM PPR: pentatricopeptide repeat domain 71 98 IPR002885 -
Vra5g1083 546 TIGRFAM PPR: pentatricopeptide repeat domain 145 171 IPR002885 -
Vra5g1083 546 TIGRFAM PPR: pentatricopeptide repeat domain 206 240 IPR002885 -
Vra5g1083 546 TIGRFAM PPR: pentatricopeptide repeat domain 175 201 IPR002885 -
Vra5g1083 546 Gene3D Tetratricopeptide repeat domain 7 120 IPR011990 GO:0005515
Vra5g1083 546 PANTHER OS05G0439300 PROTEIN 3 523 - -
Vra5g1083 546 Gene3D Tetratricopeptide repeat domain 126 257 IPR011990 GO:0005515
Vra5g1083 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Vra5g1083 546 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1083 Vra-Chr5 17348581 17350326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1083 12 512 Glycoside Hydrolase AT3G49170 32.087 7.00e-85 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1083 - - gmx:100806006 907.901