Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1082 ATGAGCGAGGGCCGACTATTGAGTAAGATTCTGAACAAGTGTTCGAAGCGTCGTTTGCTTGATCAGGGAAAGCAAGCACATGGAGTTGTGGAGAAACTAGGATTTAGGCGTGATTTGGTTTTGAACAATGATCTTATAGATATGTACTCAAAATGTGGTACCATGGATTTGGCTTGTTCGGTGTTTGTTCGAATGACTCAGAGAAATGTAGTGTCTTGGACGGCTCTAATGTGTGGATATCTGCAAAATGGTGATGCCAGAGCCTCTCTGCTTTTGTTTTCTAAAATGGGTCATTCAGATGTTAGGCCAAATGAGTTCACACTATCCACGAGTCTTAAAGCATCTGGGATTTTGGGAATCGCTCAGAATGGAATGCAGATACATGGCTTTTGTGCAAAATCTAATTTTGATTGGGTACCTGTTGTGGGCAATTCTACGATGGACATGTATTCCAAGTGTGGGATGGTTAGGGAGGCAGCGCAAGTGTTCAACACTTTGACAGAGAGAAATGTTATAAGTTGGAATGTAATGATTGCTGGGTACTGCAACGATGGCAATGGTGGAGAGGCTTTGAGTCTATTTCGGGAAATGCAAGTGAATGGGGAAGTTCCAGATGGATATACATATTCAAGCTCGTTGAAGGCGTGTAATTGTGCTGGTGCAGTGGGAGAAGGAATGCAAATCCATGCTGCGTTAATCAGACATGGATTTCCTTACTTGGCTGAATCAGCTGTTGCAGGTGCTTTGGTTGATCTGTATGTCAAATGCAGGCGCATGGCTGAAGCTAGGAGAGTGTTCCATCGAATTGAAGAGAAGAGTGTGATGTCTTGGAGCACACTAATTCTTGGTTATGCACATGAAGATAATTTGGCAGAAGCAATGGACTTGTTTAGGGAGTTGAGAGAGAGCAGACATAGAATGGATGGGTTTGTACTCTCGAGTCTCATTGGTGTATTTGCTGATTTTGCTCTTGCAGAGCAAGGGAAGCAAATGCATGCTTATGCCATAAAAGTGCCGTATGGTTTATTGGAAATGTCTGTGGCTAATTCAGTGCTGGATATGTACATGAAATGCGGACTAATAGATGAGGCAGATGCACTTTTCAGAGAGATGCTAGCAAGAAATGTGGTTTCATGGACCGTTATGATCACTGGTTATGGGAAACACGGTATTGGGAACAAGGCAATTGAACTGTTTAACCAAATGCAAATGAACGGAATAGAACCTGATAGTGTAACTTACTTAGCTGTGCTCACAGCTTGCAGCCATTCTGGACTCATCAAAGAAGGTAAAAAATACTTCTCTAGTTTATGTAACAATCAGCAAATCAAACCTCAAGTAGAGCATTATGCTTGCATGGTTGATCTCCTTGGACGAGGTGGACTCTTAAAGGATGCAAAGGATCTCATTGAGAAAATGCCCCTACAGCCAAATGTGGGCATATGGCAAACACTACTCAGTGTTTGTAGAATGCATGCAGATGTGGAAATGGGGAAAGAAGTGGGAGAAATACTTATGAGATTGGATGGTAATAATCCAGCCAACTATGTCATTTTTTCAAACATGTATGCTGCTGGAGGGTATTGGAAAGAGAGTGAGAAACTAAGAGAAACCGCGAAGAGAAAGGGATTGAAGAAAGAAGCAGGACGCAGTTGGGTAGAGATAGACAAGGAAATTCATATTTTTTATAATGGAGATGGCATGCATCCTCTCATAGGGGAAATTCATGAAGTGTTGAAAGAAGTGGAGAAGAGGGTGAAGGATGAAATGGGGTATGTTCATGGTGTAAATTTTTCCTTGCATGATGTTGAGGAGGAGTCAAAGGTAGAAAGTTTGAGGGTTCATAGCGAGAAATTGGCTATTGGGTTGGTTTTGGTTAGACGGGGACTGAAAGTAGAAAAGGTGATTAGGATTTTCAAGAATTTGAGGGTTTGTGGGGATTGTCATGCATTCATCAAGGGTTTGTCAAAGGTTTTGAAGATTGTTTTTGTGGTGAGAGATGCAAATAGGTTTCACAGATTTGAGAACGGCTTGTGTTCATGTGGAGATTACTGGTGA 2058 0.4189 MSEGRLLSKILNKCSKRRLLDQGKQAHGVVEKLGFRRDLVLNNDLIDMYSKCGTMDLACSVFVRMTQRNVVSWTALMCGYLQNGDARASLLLFSKMGHSDVRPNEFTLSTSLKASGILGIAQNGMQIHGFCAKSNFDWVPVVGNSTMDMYSKCGMVREAAQVFNTLTERNVISWNVMIAGYCNDGNGGEALSLFREMQVNGEVPDGYTYSSSLKACNCAGAVGEGMQIHAALIRHGFPYLAESAVAGALVDLYVKCRRMAEARRVFHRIEEKSVMSWSTLILGYAHEDNLAEAMDLFRELRESRHRMDGFVLSSLIGVFADFALAEQGKQMHAYAIKVPYGLLEMSVANSVLDMYMKCGLIDEADALFREMLARNVVSWTVMITGYGKHGIGNKAIELFNQMQMNGIEPDSVTYLAVLTACSHSGLIKEGKKYFSSLCNNQQIKPQVEHYACMVDLLGRGGLLKDAKDLIEKMPLQPNVGIWQTLLSVCRMHADVEMGKEVGEILMRLDGNNPANYVIFSNMYAAGGYWKESEKLRETAKRKGLKKEAGRSWVEIDKEIHIFYNGDGMHPLIGEIHEVLKEVEKRVKDEMGYVHGVNFSLHDVEEESKVESLRVHSEKLAIGLVLVRRGLKVEKVIRIFKNLRVCGDCHAFIKGLSKVLKIVFVVRDANRFHRFENGLCSCGDYW* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1082 685 Pfam PPR repeat family 169 216 IPR002885 -
Vra5g1082 685 Pfam PPR repeat family 68 114 IPR002885 -
Vra5g1082 685 Pfam PPR repeat family 374 422 IPR002885 -
Vra5g1082 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Vra5g1082 685 PANTHER - 1 643 - -
Vra5g1082 685 TIGRFAM PPR: pentatricopeptide repeat domain 377 411 IPR002885 -
Vra5g1082 685 TIGRFAM PPR: pentatricopeptide repeat domain 349 377 IPR002885 -
Vra5g1082 685 TIGRFAM PPR: pentatricopeptide repeat domain 172 205 IPR002885 -
Vra5g1082 685 TIGRFAM PPR: pentatricopeptide repeat domain 276 308 IPR002885 -
Vra5g1082 685 TIGRFAM PPR: pentatricopeptide repeat domain 71 105 IPR002885 -
Vra5g1082 685 Gene3D Tetratricopeptide repeat domain 343 561 IPR011990 GO:0005515
Vra5g1082 685 Pfam E motif 492 554 IPR046848 -
Vra5g1082 685 Gene3D Tetratricopeptide repeat domain 125 234 IPR011990 GO:0005515
Vra5g1082 685 Gene3D Tetratricopeptide repeat domain 4 118 IPR011990 GO:0005515
Vra5g1082 685 Pfam PPR repeat 248 273 IPR002885 -
Vra5g1082 685 Pfam PPR repeat 450 473 IPR002885 -
Vra5g1082 685 Pfam PPR repeat 276 303 IPR002885 -
Vra5g1082 685 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 1 643 - -
Vra5g1082 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 344 374 IPR002885 -
Vra5g1082 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Vra5g1082 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Vra5g1082 685 Pfam DYW family of nucleic acid deaminases 591 685 IPR032867 GO:0008270
Vra5g1082 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1082 Vra-Chr5 17346392 17348636 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1082 8 685 Glycoside Hydrolase AT3G49170 38.261 1.10e-158 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1082 - - gmx:100806657 1219.91