Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1068 ATGGGTTACATCCACTATGGAAGAAATCTCCGCAACATATTCAGATTCAAATCCGCCACCGGCTTCGTCACAAATTCTGCCAGATCGCAGCCGAGGTCACGCGCTCCTTTTCTCGGAAATGTTCCTTTCTCCACCAATTCGGACGCCAGAATGGTGCAGGACCTTCTAGCGGAGGTGGAACGCGACAGACTCAGGGAGCGAAACGAGCGATTGAGACTCGGTTTGGACACAGCTGACATCGACGCGGAGCCCGAGCAGGATTACATGGGCGTGGAGCCACTCATCGCGAAGCTGAATAAGAAGAACGAGAAGGAATCGGGGGACTTGAATCGCTACGAGGAGCCCACGGACTCCGATGACGATTCCGACGAGGAAACGCGGGAAGAGGCCGACAAACGGCACCGCGACTTCGAGCGCAAGTTCGAGCGCCACCAGGACCTTCTCAAGGGCTTCACCGACGCCGAAACCCTCGATGACGCCTTCAAGTGGATGACCAAAATTGACAAGTTCGAGCACAAGCATTTTCGTCTACGTCCGGAATATAGGGTTATCGGCGAGCTCATGAACCTGCTCAAGGTGGTGACGGAGCAGAAGGATAGGTTTGTTCTGCAGAATAAGCTTAATAGGGCGTTGAGGTTGGTGCAGTGGAAGGAGGCCTATGATCCTGATAACCCTGCCAATTATGGTGTGATTCAGCGTGAGCAGCAGGATGCGGCTGCCGCGGCGGATGCACGGGAAGACGCTGAGTTGGAGAAGGAGAAGTTGATTGGGGAAGGGGATAATGCTGGTGATGATGATGAGGAGGAGTTTGATGACATGAAGGAGAAAGATAATGTACTGCTGGCTAAACTTGAGGCTATTGACAGGAAGCTTGAGGAGAAGCTGGCGGAGCTTGAATATACGTTTGGGAGGAAGGGGAAGGCACTGGAGGAAGAGATCAAGGATCTTGCTGAGGAGAGAAATGAATTGACTGAGCAGAAGAGAAAACCGCTTTACCGGAAGGGTTTTGACACAAGATTGATAGACATGAACCGAACTTGTAAAGTCACCAAGGGAGGACAAGTTGTGAAGTATACTGCTATGGTAGCTTGTGGAAACTATAATGGTGTTATTGGTTTTGCAAAAGCCAAAGGCCCTGCAGTCCCAGTTGCCCTTCAGAAGGCCTACGAGAAATGCTTTCAGAATTTGCATTACGTAGAGCGACATGAGGAGCATACAATTGCCCATGCAATTCAAACGTCTTATAAAAAGACCAAGGTGTATCTCTGGCCTGCTCCAACAACAACTGGTATGAAAGCTGGCAGAACAGTGGAATCCATACTTCACTTGGCTGGTTTAAAGAATGTCAAGTCGAAGGTCATTGGTTCCAGAAATCCTCATAATACAGTTAAGGCTGTCTTCAAAGCACTTAATGCGATTGAAACACCAAGGGATGTTCAAGAGAAGTTTGGTAGGACTGTGGTTGAGAAGTATCTGTTGTGA 1482 0.4946 MGYIHYGRNLRNIFRFKSATGFVTNSARSQPRSRAPFLGNVPFSTNSDARMVQDLLAEVERDRLRERNERLRLGLDTADIDAEPEQDYMGVEPLIAKLNKKNEKESGDLNRYEEPTDSDDDSDEETREEADKRHRDFERKFERHQDLLKGFTDAETLDDAFKWMTKIDKFEHKHFRLRPEYRVIGELMNLLKVVTEQKDRFVLQNKLNRALRLVQWKEAYDPDNPANYGVIQREQQDAAAAADAREDAELEKEKLIGEGDNAGDDDEEEFDDMKEKDNVLLAKLEAIDRKLEEKLAELEYTFGRKGKALEEEIKDLAEERNELTEQKRKPLYRKGFDTRLIDMNRTCKVTKGGQVVKYTAMVACGNYNGVIGFAKAKGPAVPVALQKAYEKCFQNLHYVERHEEHTIAHAIQTSYKKTKVYLWPAPTTTGMKAGRTVESILHLAGLKNVKSKVIGSRNPHNTVKAVFKALNAIETPRDVQEKFGRTVVEKYLL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1068 493 Pfam Ribosomal protein S5, N-terminal domain 336 400 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra5g1068 493 MobiDBLite consensus disorder prediction 102 134 - -
Vra5g1068 493 SUPERFAMILY dsRNA-binding domain-like 331 401 - -
Vra5g1068 493 Pfam Ribosomal protein S5, C-terminal domain 415 482 IPR005324 GO:0003735|GO:0005840|GO:0006412
Vra5g1068 493 MobiDBLite consensus disorder prediction 237 272 - -
Vra5g1068 493 Coils Coil 127 147 - -
Vra5g1068 493 ProSiteProfiles S5 double stranded RNA-binding domain profile. 336 399 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra5g1068 493 PANTHER RIBOSOMAL S SUBUNIT 72 493 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vra5g1068 493 Coils Coil 281 301 - -
Vra5g1068 493 Coils Coil 231 258 - -
Vra5g1068 493 Coils Coil 306 329 - -
Vra5g1068 493 Gene3D - 401 490 IPR014721 -
Vra5g1068 493 MobiDBLite consensus disorder prediction 239 259 - -
Vra5g1068 493 Gene3D - 287 397 - -
Vra5g1068 493 SUPERFAMILY Ribosomal protein S5 domain 2-like 405 483 IPR020568 -
Vra5g1068 493 PANTHER 28S RIBOSOMAL PROTEIN S5, MITOCHONDRIAL 72 493 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1068 K02988 - gmx:100809192 768.844