Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1067 ATGGTCCTTCTTCTTCACCTTCCAAGGTTCCCTCTCTACTTGATTACTTCATCTCACTCCCTTCATCTCCGAGCCCTCTCAACTTCCTCCAAAACCACCCTCTTACGCCCACCCAAAGCCACGCTCACCACCTCACAACCCGTGACCGTAACAAACCCTTCCGCAACAGAACTATCCCTCGAGAAGCTCTTCGTTCCGCCAGGGACCAACGTGTCTCTCGACACCGCGAGAGTGTTGAACGGTTCCAACATTCTTCTTAGCAATTACGCCAACGACGCTCTGATATCGCAGGCCGAATTCGTGAAAAGCAGTGTGAAAACCGAAGACTGCCCCTCCGATGGCCTCCCTGAATTTGCTCTCGTTGGCCGCTCCAATGTCGGCAAATCCTCCCTCCTCAACTCTCTCGTGCGCCGCAAGAAGCTCGCCTTAACTTCCAAGAAACCCGGCAAAACGCAATGCATTAACCATTTTCGGATTAATGATAGCTGGTATCTGGTTGATTTGCCTGGATATGGGTATGCATCTGCACCGCATGAACTTAGAATGGACTGGGAAAAATTCACCAAGGACTATTTCCTTAACCGTTCAACATTAGTTTCAGTATTCCTTCTAATAGATGCTAGCATTCCTGCTAAACAAATCGATCTTGACTATGCCAGTTGGTTGGGTCAGAATCAGATCCCAATGACAATAATCTTTACCAAATGTGACAAGCGGAAGAAAAAAAAAAACGGAGGCAAAAGACCAGAGGAAAATGTTGATGATTTTCAGGACTTGATTCGAGGTTTCTTCCAATCAGTGCCTCCATGGATCATGACCAGTAGTGTCACCCATCAGGGTCGTGATGAAATACTTCTCCACATGGCCCAGCTACGGAACTATTGGCTTAAGCACTAA 897 0.4749 MVLLLHLPRFPLYLITSSHSLHLRALSTSSKTTLLRPPKATLTTSQPVTVTNPSATELSLEKLFVPPGTNVSLDTARVLNGSNILLSNYANDALISQAEFVKSSVKTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKKPGKTQCINHFRINDSWYLVDLPGYGYASAPHELRMDWEKFTKDYFLNRSTLVSVFLLIDASIPAKQIDLDYASWLGQNQIPMTIIFTKCDKRKKKKNGGKRPEENVDDFQDLIRGFFQSVPPWIMTSSVTHQGRDEILLHMAQLRNYWLKH* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1067 298 Pfam 50S ribosome-binding GTPase 118 235 IPR006073 GO:0005525
Vra5g1067 298 CDD YihA_EngB 117 291 IPR030393 GO:0005525
Vra5g1067 298 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 39 295 - -
Vra5g1067 298 TIGRFAM GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 98 286 IPR019987 GO:0005525
Vra5g1067 298 Gene3D - 89 294 IPR027417 -
Vra5g1067 298 ProSiteProfiles EngB-type guanine nucleotide-binding (G) domain profile. 114 294 IPR030393 GO:0005525
Vra5g1067 298 PANTHER MSS1/TRME-RELATED GTP-BINDING PROTEIN 39 295 - -
Vra5g1067 298 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 294 IPR027417 -
Vra5g1067 298 Hamap Probable GTP-binding protein EngB [engB]. 103 292 IPR019987 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1067 Vra-Chr5 17072215 17075451 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1067 K03978 - gmx:100784426 517.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1067 5 17072215 17075451 Vra5g1067 5 17072215 17075451 ECH