Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1059 ATGCGCCCACCGGTTATTCTCAAAACTACCTCTCTCTCTGATTCTTATACCTCTCCCTGCGATCGCAGACTCAACACTCTCGCCAGACATTTCATTAGCGTTCTTCAACCAATGGCTTCTAACGATGGCATCTCCGCTTCGCCAACCGCTGCTTCTGATTCCGTCTTCAACCACCTCGTTCGTGCGCCTGAAGATCCTATCCTCGGGGTGACGGTTGCGTATAACAAAGATCCGAGTCCAGTTAAGCTCAACTTGGGCGTTGGTGCTTACCGAACTGAGGAAGGAAAACCTCTTGTTTTGAATGTAGTGAGGAAGGTTGAGCAGCTACTCATAAATGACTTGTCACGCAACAAGGAATATCTTCCAATTGTTGGGCTTGCTGATTTTAATAAATTGAGTGCTAAGCTTATTTTTGGGGCTGACAGCCCTGCTATTCGAGAGAACAGGGTTACCACTGTACAATGCTTATCTGGGACCGGTTCATTAAGAGTTGGGGGTGAATTTTTGGCTAAACACTATCACCAACGGACTATATACTTGCCAACACCAACCTGGGGCAATCACCACAAGGTTTTCAACTTAGCGGGGTTGTCTGTCAAAACATATCGCTACTATGCTCCAGCAACACGGGGGCTTGACTTTGAAGGACTTCTAGAAGATCTTGGTTCTGCTCCATCTGGATCTATTGTTTTGCTACATGCATGCGCACATAACCCAACTGGTGTTGATCCAACCCTCGAGCAATGGGAGCAGATTAGGCAGCTAATAAGATTAAAAGCTTTGTTACCTTTCTTTGACAGTGCATATCAGGGTTTTGCTAGCGGCAGTCTAGATGCAGATGCCCAACCTGTTCGTTTGTTTGTTGCTGATGGGGGTGAATTGCTGGTAGCACAAAGTTATGCAAAGAATCTGGGTCTTTATGGAGAACGTGTTGGAGCCTTAAGCATTGTCTGCAAGTCAGCTGATGTTGCAAGCAGGGTTGAGAGCCAGCTGAAACTCGTGATTAGGCCCATGTACTCGAATCCTCCCATTCACGGTGCATCCATTGTGGCTGCCATTCTCAAGGACGGAGATTTGTTCAATGAGTGGACTATCGAGTTGAAAGGAATGGCTGATCGAATTATCAGTATGCGCCAACAACTTTTTGATGCTTTACGTTCCAGAGGAACACCTGGTGATTGGAGTCACATTATCAAACAAATTGGCATGTTTACTTTCACAGGATTGAATGCTGAACAAGTTTCCTTCATGACTAATGAGTATCATATATACATGACATCTGATGGGAGAATTAGTATGGCCGGTCTAAGTTCCAAAACGGTCCCACATCTGGCTGATGCGATCCATGCAGCTGTAACCGGTGGTGTCTAA 1371 0.4581 MRPPVILKTTSLSDSYTSPCDRRLNTLARHFISVLQPMASNDGISASPTAASDSVFNHLVRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKVEQLLINDLSRNKEYLPIVGLADFNKLSAKLIFGADSPAIRENRVTTVQCLSGTGSLRVGGEFLAKHYHQRTIYLPTPTWGNHHKVFNLAGLSVKTYRYYAPATRGLDFEGLLEDLGSAPSGSIVLLHACAHNPTGVDPTLEQWEQIRQLIRLKALLPFFDSAYQGFASGSLDADAQPVRLFVADGGELLVAQSYAKNLGLYGERVGALSIVCKSADVASRVESQLKLVIRPMYSNPPIHGASIVAAILKDGDLFNEWTIELKGMADRIISMRQQLFDALRSRGTPGDWSHIIKQIGMFTFTGLNAEQVSFMTNEYHIYMTSDGRISMAGLSSKTVPHLADAIHAAVTGGV* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1059 456 PANTHER ASPARTATE AMINOTRANSFERASE 53 454 IPR000796 GO:0006520|GO:0008483
Vra5g1059 456 SUPERFAMILY PLP-dependent transferases 54 452 IPR015424 -
Vra5g1059 456 Pfam Aminotransferase class I and II 82 448 IPR004839 GO:0009058|GO:0030170
Vra5g1059 456 CDD AAT_like 83 436 - -
Vra5g1059 456 Gene3D - 115 356 IPR015421 GO:0003824
Vra5g1059 456 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 299 312 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vra5g1059 456 PANTHER ASPARTATE AMINOTRANSFERASE 53 454 - -
Vra5g1059 456 Gene3D Aspartate Aminotransferase, domain 1 61 448 IPR015422 GO:0003824
Vra5g1059 456 PRINTS Aspartate aminotransferase signature 230 249 IPR000796 GO:0006520|GO:0008483
Vra5g1059 456 PRINTS Aspartate aminotransferase signature 261 273 IPR000796 GO:0006520|GO:0008483
Vra5g1059 456 PRINTS Aspartate aminotransferase signature 329 354 IPR000796 GO:0006520|GO:0008483
Vra5g1059 456 PRINTS Aspartate aminotransferase signature 397 415 IPR000796 GO:0006520|GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1059 Vra-Chr5 16978536 16983339 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1059 K14454 - gmx:547509 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1059 5 16978536 16983339 Vra5g1059 5 16978536 16983339 ECH