Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1054 ATGGTGAATGCCTTAGTTGAACGTGCCACAAGCAGCATGCTTGTGGGCCCTGATTGGGCTTTGAACATGGAGATCTGTGACATACTCAATCGCGACCCTGGGCAAACAAAGGATGTTATTAAAGGTATAAAGAAGCGGCTTGGAAGTAAAGTTCCTAGAGTTCAAATAAGTGCATTAACTCTTTTGGAGACAATAATTAAGAATTGTGGAGACATTGTACACATGCATGTTGCCGAGAGAGATGTTCTTCATGAGATGGTTAAAATAGCGAAGAAGAAGATCAATTATCAGGTCCGAGATAAGATATTGGTTCTTATAGATAGTTGGCAAGAGGCTTTTGGAGGGCCAAGATCAAGATATCCACAGTATTATGCAGCATACCAGGAGCTTTTGCGTGCTGGGGCAATATTCCCTCAGAGGTCTGAGCGATCTGCACCTGTGTTCACACCGCTACAAACACAACCATTGTCATCATACCCTCAAAATATACGAGATACTTTTGCTCAACAAGACACAGCTGAGTCATCTGCAGATTCTGAGTTTCCAGCCCTAAGTTTGTCAGAAATTCAAAATGCACGTGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCATTGGACCCTGGTAACAAAGAAGGTCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTACACCTTGTTAATTCAACTTCTGACGAATCATTGCTATGCCAAGGCTTATCGCTGAATGATGATCTTCAGCGTGTCTTGGCCAAGCATGAATCCATTGCTTCGGGAACTTCTGCTTCGGGAACTTCTTCAGGAACTCCTGCTCAAAATCATACTGAGAATCTGAAGACTGCACCTACTGGAACACTTGTAGATTTTGATGGTCCTTTGGTTGATTTTGGAGATACCAGTAAACAGACGGATGGAAGGTCGTCTGCTAATGCTGAAACTGAGTCTCAATCTTTGAACCAGTTACTGCTTCCAGCGCCCCCAACATCAAATGAACCAGCTTCCCCTGCGAAGGTTGATCCTAAAGTGGACCTGCTCAGTGGTGACGACTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTCGTTCCTTTAGGCGAACAGCAGCCAGCCAGCCCTATGTCTCAACAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAGCAATCCACCTACTTCTGTTAATATCCAGCCAATTAATGTTGCTGGTCAAACCAGTCCATTTTCTCCTCAATGTCAACAGCAGCAGACTTTCATATCTCAAGGGCTGTTTTACCCCATTGGAGGTGGGCCAAATGTTGGATCACCTCGGTATGAGCAATCACCTTATATGCAGAGCACAGGTCCTTCTTGGAATGGCCAGGTTGCGCAGCAGCAACAGCCTCCTTCACCAGTTTACGGTACAACAAGTGGTGGATCATTTCCGCCGCCTCCGTGGGAAGCACAACCTACAGACAATGATAGTCCAGTATTGGGCAGTCAATACCCACAACCATTGCAAGTCACTCAAGTGGTAATGACGCATATACAAAGTGCTGCACATCCTCAGGGACCTCAAGCGGCGGGGCATGACCAGGCTGTTGGAATGTATATGCAACCAAATGCTAGCCATATCTCAACAATCAACAACAATGTTCAAAGTAATCAATCCGGCTTGTACCCGCAGCATATTCAGGGTGTTGCCAGTCCCTATATGGGTATGACTTCACATCCAATGCATTCCATGTATCCTCAACAAATGTATGGCAACCAATTCGTAGGATATGGCTATGGTCAGCAACCAGCGGTTCAGTATGTTGAGCAGCAAATGTATGGTTTATCAATGAGAGATGATGGTGCTCTGAGAAATTCTTACCAGGTTTCTTCTGCATCCTATGTGCCACCTGTGAAGCCTTCCAAACCAGAGGATAATTTATTTGGGGACCTTGTTAACTTGGCAAAAGTGAAACCAAAACCTACTGCTGACCGAACTGGTGGCGTGTAA 2016 0.4469 MVNALVERATSSMLVGPDWALNMEICDILNRDPGQTKDVIKGIKKRLGSKVPRVQISALTLLETIIKNCGDIVHMHVAERDVLHEMVKIAKKKINYQVRDKILVLIDSWQEAFGGPRSRYPQYYAAYQELLRAGAIFPQRSERSAPVFTPLQTQPLSSYPQNIRDTFAQQDTAESSADSEFPALSLSEIQNARGIMDVLAEMLNALDPGNKEGLQQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLSLNDDLQRVLAKHESIASGTSASGTSSGTPAQNHTENLKTAPTGTLVDFDGPLVDFGDTSKQTDGRSSANAETESQSLNQLLLPAPPTSNEPASPAKVDPKVDLLSGDDYNSPKAETSLALVPLGEQQPASPMSQQNALVLFDMFSNGSNPPTSVNIQPINVAGQTSPFSPQCQQQQTFISQGLFYPIGGGPNVGSPRYEQSPYMQSTGPSWNGQVAQQQQPPSPVYGTTSGGSFPPPPWEAQPTDNDSPVLGSQYPQPLQVTQVVMTHIQSAAHPQGPQAAGHDQAVGMYMQPNASHISTINNNVQSNQSGLYPQHIQGVASPYMGMTSHPMHSMYPQQMYGNQFVGYGYGQQPAVQYVEQQMYGLSMRDDGALRNSYQVSSASYVPPVKPSKPEDNLFGDLVNLAKVKPKPTADRTGGV* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1054 671 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Vra5g1054 671 SUPERFAMILY ENTH/VHS domain 3 139 IPR008942 -
Vra5g1054 671 PANTHER TARGET OF MYB PROTEIN 1 1 665 - -
Vra5g1054 671 MobiDBLite consensus disorder prediction 266 292 - -
Vra5g1054 671 CDD VHS 2 132 - -
Vra5g1054 671 MobiDBLite consensus disorder prediction 266 326 - -
Vra5g1054 671 CDD GAT_GGA_like_plant 188 266 - -
Vra5g1054 671 MobiDBLite consensus disorder prediction 310 326 - -
Vra5g1054 671 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Vra5g1054 671 Pfam VHS domain 3 130 IPR002014 GO:0035091|GO:0043130
Vra5g1054 671 PANTHER TOM1-LIKE PROTEIN 1 665 IPR044836 GO:0035091|GO:0043130|GO:0043328
Vra5g1054 671 Gene3D - 1 148 IPR008942 -
Vra5g1054 671 MobiDBLite consensus disorder prediction 441 505 - -
Vra5g1054 671 MobiDBLite consensus disorder prediction 449 481 - -
Vra5g1054 671 Gene3D - 182 275 IPR038425 -
Vra5g1054 671 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Vra5g1054 671 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Vra5g1054 671 SUPERFAMILY GAT-like domain 140 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1054 Vra-Chr5 16936991 16941974 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1054 - - var:108321848 1207.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1054 5 16936991 16941974 Vra5g1054 5 16936991 16941974 ECH