Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1053 ATGCAGGCATCGAAGGCAAGGCTGTTCAAGGAGTACCATGAGGTGCAGCGAGAAAAGATTGCTGATCCTGATATTCAACTAGTCTGTGATGAATCTAACATTTTTAAATGGACGGCTTTTGTCAAGGGTCCCTCTGAGACTCCTTACGAGGGAGGGGTGTTCCAGCTTTCCTTTTCTGTTTCGGATCAGTATCCTCTACAGCCTCCTCAAGTCCGGTTTTTGACAAAGATATTTCATCCAAATGTTCACTTTAAGACTGGGGAGATTTGTCTGGATATCTTGAAAAATGCTTGGAGCCCAGCTTGGACCCTTCAATCTGTCTGTAGGGCTATAATTGCTTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGCAATCTTCTGCGTTCAGGCGATGTTAGAGGCTACCAATCCATGGCAAGAATGTACACAAGACTTGCAGCAATGCCAAAGAAAGGCTGA 474 0.4557 MQASKARLFKEYHEVQREKIADPDIQLVCDESNIFKWTAFVKGPSETPYEGGVFQLSFSVSDQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGYQSMARMYTRLAAMPKKG* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1053 157 SUPERFAMILY UBC-like 4 153 IPR016135 -
Vra5g1053 157 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 157 - -
Vra5g1053 157 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 94 IPR023313 -
Vra5g1053 157 CDD UBCc 7 148 IPR000608 -
Vra5g1053 157 Pfam Ubiquitin-conjugating enzyme 7 147 IPR000608 -
Vra5g1053 157 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 3 153 IPR000608 -
Vra5g1053 157 PANTHER BNAA09G04490D PROTEIN 3 157 - -
Vra5g1053 157 SMART ubc_7 6 153 - -
Vra5g1053 157 Gene3D Ubiquitin Conjugating Enzyme 1 152 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1053 Vra-Chr5 16931916 16935035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1053 7 123 Miscellaneous Gene Families AT3G17000 34.146 9.15e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1053 K10689 - sind:105164758 313.153