Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1047 ATGGTCACTTGGAAGGTCTTGGTCAAAGCCAACAGAAGAACTTTGTCGCCTGTTGCTAGGGCTGGAACTGCAACGAATGTTGAAGTCTGTTCAGTAGCTTCTCCGTTGTCTAAGTCGTCGTCAAGTCCTCATAACTGGTCACCTTCAGTTGGATTGGACTACCGTGCTTTTGTGTTTGGTGCTTTCTCCCCAAGGTCTTTCAGGGGTTTTGAGAGATCAAAACCCAGGGGCCAGCTCTGGAGGAAGGTACTATTCCATTTTTTCATCTGTTTCATGGTTGGTGTTTCTGTTGGACTCATTCCACTTGCATCAGTACACATGTCAATGAATCTCATGCCAAAACATCGAGCCTTCTCATTTGAGGTGATATCTGCAATGGGAAATTTCCAGCAGCTTGAAAATGCAGCGATAAATATAACACCATCAGTCAACGAGGCTGTGAATTTTAATGCTTCTTTGTATGTAACTGCGAAAGAACCAGATCTAATAGATGGCGTGGCATATAATATGTCAAATAGCCAAATCCGTGAACATTCACATGTGGAGTCTCAGAAGCTACTCATCATTGTGACTCCAACATACAATCATCTATTTCAAGCATATTACTTGCATCGCTTGTCACAAACATTAAAACTGGTCTCACCTCCCTTGTTGTGGATTGTTGTTGAGATGACTTCCCAATCTGAAGAAACTGCTGACATCTTAAGGAGTAGTGGGATTATGTACAGGCATCTCACTTGTAAAACAAATATAACAAACCCAGGCCATAGGAGCATTCTTCAAAGAAATATTGTAATGGCTCACATTGAAACTCATCGTCTTGATGGAATTGTTTACTTTGCAGATGATGATAACATCTATTCAGTGGAGCTCTTTCAGCGAATGAGAGAAATAAGGCGATTTGGAACATGGACTGTAGCAAGATTATCAGGGGATAGAAGTAGAATTGTCTTGCAAGGACCCATCTGTAATGGAAATCGAGTAATTGGATGGCATACGAATGAATCAAATGGGAAATCCAAAAGATTTCATGCTGAAATGTCGGGCTTTGCCTTCAATAGTACGATACTCTGGGATCCAAAGAAGTGGCATCGCCCTACTCTAGAATCTATCAGGCAACTTGACTCGGTCAAGGACAGTTTGAGGGTCAGCACATTGATTGAGCAGTTGGTTGAAGATGAAAGTCAAATGGAGGGCTTGATGGACAACTGCTCGAGAATTATGGTCTGGCATATCGATCTTGAATCATCTTATTCGTCCTATCCACAGAAATGGATTGTAAAGAACAACCTAGATGCCATTTTTCAGCTTCCACTTGTGTGA 1323 0.4172 MVTWKVLVKANRRTLSPVARAGTATNVEVCSVASPLSKSSSSPHNWSPSVGLDYRAFVFGAFSPRSFRGFERSKPRGQLWRKVLFHFFICFMVGVSVGLIPLASVHMSMNLMPKHRAFSFEVISAMGNFQQLENAAINITPSVNEAVNFNASLYVTAKEPDLIDGVAYNMSNSQIREHSHVESQKLLIIVTPTYNHLFQAYYLHRLSQTLKLVSPPLLWIVVEMTSQSEETADILRSSGIMYRHLTCKTNITNPGHRSILQRNIVMAHIETHRLDGIVYFADDDNIYSVELFQRMREIRRFGTWTVARLSGDRSRIVLQGPICNGNRVIGWHTNESNGKSKRFHAEMSGFAFNSTILWDPKKWHRPTLESIRQLDSVKDSLRVSTLIEQLVEDESQMEGLMDNCSRIMVWHIDLESSYSSYPQKWIVKNNLDAIFQLPLV* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1047 440 CDD GlcAT-I 185 415 IPR005027 GO:0015018|GO:0016020
Vra5g1047 440 Pfam Glycosyltransferase family 43 206 415 IPR005027 GO:0015018|GO:0016020
Vra5g1047 440 SUPERFAMILY Nucleotide-diphospho-sugar transferases 186 431 IPR029044 -
Vra5g1047 440 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 186 432 IPR029044 -
Vra5g1047 440 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 52 434 IPR005027 GO:0015018|GO:0016020
Vra5g1047 440 PANTHER BETA-1,4-XYLOSYLTRANSFERASE IRX9L-RELATED 52 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1047 Vra-Chr5 16852161 16858600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1047 12 437 Glycosyltransferase AT1G27600 44.028 1.52e-117 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1047 K20869 - gmx:100808765 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1047 5 16852161 16858600 Vra5g1047 5 16852161 16858600 ECH