Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1041 ATGGACAATATCTCAGAAATGGAAAGTGCCATAGAAGAGTCCCTTCTGAGCAAGAAGAGTTCCAATGCCAAGGGTGGCTTCAGAACCTTACCTTTCATCATAGCAAATGAGGCCTTTGAGAGACTGGCTAGCCTTGGGCTAATGCCTAACATGATATTGTACTTGACAAGACAGTATGGCATGCAAACTGCAGGAGCCACCAATTTTCTCCTACTATGGTCTGCTGTCTCAAATCTCACCCCATTCATCGGTGCTGTCCTTGCAGACTCCTATGTGGGTCGATATTCCATGATCGCTTTTGGATCTGTTGCAAGCCTACTGGGGATGGTTCTTCTATGGTTAACAACTTTGATTCCTATGTCAAAGCCACTTTGTGAGGGATTTTTAACCGACAGCTGCGATAACTCTCCTACAACAATTCAACTTTTGATCTTGCATTCTTCATTTGCCCTAATGTCTATTGGAGCTGGAGGCATAAGATCATCCTCCTTGGCCTTTGGTGTTGATCAATTGACCAAGAGGGACAAAGATGCGGGAATCCAAGAGAGCTATTTCAGCTGGTACTTTGCTGCTGTTTCAATGTCATCACTGATAGGTTTAACTGTTGTTGTCTATATTCAAGATTACATGGGGTGGGCAGTGGGATTTGGAATTCCCGTTATCCTAATGTTAATAGCAACAGTATCATTTTTCTTAGCTTCTCGGTTTTATGTAATGGCGGAGGTTAAAAGGAACATGCTAAATGGTATAGCACAGGTACTTGTTGCCTCTTACAAAAACAGATTTCTTCAGTTATCCCAGGAGACCAAGAATGGCACATACCACCAAGAAAAGGGTTCTGATCTCCTAATGCCAACTGAAAACTTAAGGTTTCTGAACAAAGCATGCGTAGTTAGAAATCCCTCACAGGATTTAACACCAGAGGGAAGAGCTAGGAATCCATGGAATCTTTGCACAGTGGAGCAAGTGGAAGATCTGAAGGCACTAGTCAAGATAGTTCCAATATGGTCAACAGGAATCATTATCGGTGTGAACATGAGTCAAGGTTCCTTTCTGGTACTAGAGGCATCTTCCATGAACCGCCACATCACTCCAAATTTTGAAATTCCCGCAGGCTCCTTTGTATCATTTATGATTGTATCTCTGGTTCTCTGGGTTATAATCTATGACCGCATTTTAGTCCCTGTGGTATCAAATATAAGAGGGTACCCAGCAAAGTTAGGAGCAAAGAAAAAGATGGGAGTTGGTCTTTTTACTAGCTGCGTATCAATTGCATCCCTTGTAATTGTAGAGAGCATTAGAAGAAAAATTGCCATTGAGCAAGGATACTCAGATCAAGCAGAAGCTGTGGTGAACATGTCTGCTTTGTGGCTTTTGCCTCGCCAAATCCTCAATGGAGTGGCTGAGGGCACAAGTGTAATAGGACAGAATGAGTTTTTCCTCACTGAGCTACCTTCATCTATGGCTAGTCTTGCTTCCAGTCTTAATGGCCTTGGATCTTCTCTTGCAAGTTTGGTAGCAAGTTTCATTCTGAGTGTTGTGGACAGGGTTAGTGGAGGCGGAGGACATGAGAGTTGGGTTTCAAGCAACATTAACAAGGGTCATTATGACAGCTACTATGGTTTAATCTGTGCTTTGAGCTTTCTAAATTTTATATATTTTATCTATTGTAGTAAATCTTATGGTCCTTGTAAGGATAGAAGAAAATAG 1710 0.4205 MDNISEMESAIEESLLSKKSSNAKGGFRTLPFIIANEAFERLASLGLMPNMILYLTRQYGMQTAGATNFLLLWSAVSNLTPFIGAVLADSYVGRYSMIAFGSVASLLGMVLLWLTTLIPMSKPLCEGFLTDSCDNSPTTIQLLILHSSFALMSIGAGGIRSSSLAFGVDQLTKRDKDAGIQESYFSWYFAAVSMSSLIGLTVVVYIQDYMGWAVGFGIPVILMLIATVSFFLASRFYVMAEVKRNMLNGIAQVLVASYKNRFLQLSQETKNGTYHQEKGSDLLMPTENLRFLNKACVVRNPSQDLTPEGRARNPWNLCTVEQVEDLKALVKIVPIWSTGIIIGVNMSQGSFLVLEASSMNRHITPNFEIPAGSFVSFMIVSLVLWVIIYDRILVPVVSNIRGYPAKLGAKKKMGVGLFTSCVSIASLVIVESIRRKIAIEQGYSDQAEAVVNMSALWLLPRQILNGVAEGTSVIGQNEFFLTELPSSMASLASSLNGLGSSLASLVASFILSVVDRVSGGGGHESWVSSNINKGHYDSYYGLICALSFLNFIYFIYCSKSYGPCKDRRK* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1041 569 Pfam POT family 96 526 IPR000109 GO:0016020|GO:0022857|GO:0055085
Vra5g1041 569 SUPERFAMILY MFS general substrate transporter 27 558 IPR036259 -
Vra5g1041 569 Gene3D MFS general substrate transporter like domains 4 568 IPR036259 -
Vra5g1041 569 PANTHER PROTEIN NRT1/ PTR FAMILY 1.3 23 562 - -
Vra5g1041 569 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 23 562 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1041 Vra-Chr5 16804274 16813396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1041 13 567 Organic Solute Cotransporters AT1G52190 49.644 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1041 K14638 - gmx:100809846 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1041 5 16804274 16813396 Vra5g1041 5 16804274 16813396 ECH