Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1039 ATGAGCCCGACAGCGTCTAACTCTAAATGCTCAGTCCATCAACTGGAGAACATAGATGAGAATGCTCCTGCAGATTGGACTGCATCATCCTGTCCCCCACCTGATACTCCAACTGAGTCTATGGAGTTCCTTGCTAGATCATGGAGTCTTTCTGCCATGGAACTCTCTAAAGCATTGCACAGCACCAACATTGCGATCTCCACCAGCATAGATATGCCACTTTCTTGCCCTTCAGGTCACCAATTTGATACCAAGAGTTCTACTGCTTCAAAGGATTTATCTAACTGTTGTTATCCTCCAATTTCACCGAATGACAGTAGCGAAAAGAAGGATTTACTTTTACTCCATCAAGCACTCAGTACAGAATTCCTTTCCAGTCAAAACATACTCAGAAATGGGCTTTACAGAAGTTTGCTAAGAGGGAGGACAATGGGTAGGTGGTTGAAAGATCAAAAGGAGAGGAAAAAACAGGAAATTAGGACCCATAACGCTCATTTACATGCTGCGGTATCTGTGGCTGGTGTTGCTGCTGCTATTGCGGCGGTTGCAGCATCAACAGCATCACCTGAAATACCTTATTCCAACCCAAAGACCCCTCCTCCCCTGGCTTCTGCTGCAATTGCATCTGCAGCAGCTTTAGTAGCCTCTCACTGCATTGAGATTGCAGAAGATATGGGAGCTGAACATGACCAAATCTTAACAGTAGTCAACTCCGCCATTAATGCAAAAACCAATGGAGATATTATGACTTTAACAGCCGGAGCAGCCACAGCCTTGCGAGGAGCTGCTACTCTAAAGGCAAGGCTGCAAAAGGGGCCTGGAGCAACTGCCATTCCTCTAGTTGAGGAAAAGTGTAACGAAAGCAAAGAAGCAAACATTTTGACAGCACTGGACTATGTTTTTAAAGGAGGAGAACTTCTCAAACGTACAAGAAAAGGAGATCTTCACTGGAAGCAAGTTTCTTTCAATATAAATTCAAATTTGCAGGTTGTAGTCAAAATGAAAAGCAAACATATGGGAGGAACATTCACAAAAAAGAAGAAATATATAGTGACCGGCCTTTGCAATGATATCCCAGCATGGCCTGGAAGGGAGAGAGAAGACACCAATGAAAAGAGGGCATACTTTGGAATAAAAACAACAGACAGGACCATAGAATTTGAATGTGGAAGTAAAGGAGACAAACAGTTCTGGCTTGATGGTATCCAGTACATGTTGAATTGCCGTGTCAAAGTAACATTATGA 1245 0.4329 MSPTASNSKCSVHQLENIDENAPADWTASSCPPPDTPTESMEFLARSWSLSAMELSKALHSTNIAISTSIDMPLSCPSGHQFDTKSSTASKDLSNCCYPPISPNDSSEKKDLLLLHQALSTEFLSSQNILRNGLYRSLLRGRTMGRWLKDQKERKKQEIRTHNAHLHAAVSVAGVAAAIAAVAASTASPEIPYSNPKTPPPLASAAIASAAALVASHCIEIAEDMGAEHDQILTVVNSAINAKTNGDIMTLTAGAATALRGAATLKARLQKGPGATAIPLVEEKCNESKEANILTALDYVFKGGELLKRTRKGDLHWKQVSFNINSNLQVVVKMKSKHMGGTFTKKKKYIVTGLCNDIPAWPGREREDTNEKRAYFGIKTTDRTIEFECGSKGDKQFWLDGIQYMLNCRVKVTL* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1039 414 Pfam Plant pleckstrin homology-like region 305 408 IPR013666 -
Vra5g1039 414 SUPERFAMILY PH domain-like 300 408 - -
Vra5g1039 414 Pfam Auxin canalisation 34 278 IPR008546 -
Vra5g1039 414 Gene3D - 281 412 IPR011993 -
Vra5g1039 414 PANTHER PHOSPHOINOSITIDE BINDING PROTEIN 7 411 - -
Vra5g1039 414 PANTHER EXPRESSED PROTEIN 7 411 IPR040269 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1039 Vra-Chr5 16783273 16787366 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1039 - - var:108321855 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1039 5 16783273 16787366 Vra5g1039 5 16783273 16787366 ECH