Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1036 ATGGATTTTCATGGCAAGGACACCCTCCTCAGCCTAATGGACACCCAAAAATCAGAACCTCCACAATCCCCTCTTCACCTTCATCTTCAAACCCACAGAGAGATAAGCGAACAAGACCTTCAGTTCAGTTCCCCAAGGCCTTCAAGCTCCGACGGCATGTTCCCTATCATGCCGGATTCACCATGGACACTTTCCCCTCTCCCAACCCCTTCATCTTCTTTGCTTTACCACTGCATCGCTTCGCTCCACCGCCATGAAGGTAACATCTACGCAATCGCTGCTTCAAAGGGTTTGGTATTCACCGGCTCCAACAGCAGCAGAATCCGAGTCTGGAAGCAGCCAGATTGCATGGACAGAGGGTATCTCAAAGCCAGCTCCGGTGAGGTCAGAGCCATTCTCGCTTATAGCAACATGCTTTTCTCCACGCACAAGGACCACAAGATAAGGATATGGACCTTCACCGTTTCAGATAGCTTCAAGTCCAAGAAACTAGGCACTCTCCCTAGAAAGAGCTCGATCCTCATGTTCCCCTCGAGAGGGAAGAACACGCCCAAGCACAAAGATTCCGTCTCTTGCATGGCCTATTACCACTCGGAGGGCCTCCTTTACACCGGCTCCCACGACAGAACAGTGAAGGCGTGGCGTGTTTCCGACAGAAAATGCGTCGACTCGTTCGGCGCACACGAGGATAACGTCAACGCCATATTGGTGAACCAAGACGATGGTTGTCTTTTCACCGGATCCTCCGACGGGTCGGTGAAGATATGGAGAAGGGTGTATACTGAAGACTCGCACACTCTCACCATGACTCTCAAATTCCAACCCTCCCCGGTCAACGCTCTCGCGTTGAGTTGCTCGTTCAACCACTGCTTTCTCTATTCGGGGTCCTCCGATGGGATGATAAACTTCTGGGAGAAGGAACGGCTGTGCTACAGGTTCAATCATGGAGGATTCTTACAGGGTCACCGATTTGCGGTTCTTTGTTTAGCGACGGTAGGGAACATGATATTCAGTGGTTCAGAGGACACCACCATTAGGGTATGGAGGAGAGAGGAAGGGAGTTGCTACCATGAGTGTTTGACGGTTTTGGATGGACACAGAGGACCAGTGAGATGCTTGGCTGCATGCCTGGAGATGGAAAAGGTTGTGATGGGGTTCTTGGTGTACAGTGCTAGTTTGGATCAAACATTCAAAGTTTGGAGAATTAAAGTTTTGCCCGATGAAAAAATGTGCATGGACTACAGTGAGCAGTGTGAAGCCCCAAGGGTGAAGATCAGGGACTACGATATGAGCCCAGTTCTGTCGCCTTCTTGGGTGGAGAAGAAGCTTCAAGGTAGCTATTTCCAGTAG 1350 0.5044 MDFHGKDTLLSLMDTQKSEPPQSPLHLHLQTHREISEQDLQFSSPRPSSSDGMFPIMPDSPWTLSPLPTPSSSLLYHCIASLHRHEGNIYAIAASKGLVFTGSNSSRIRVWKQPDCMDRGYLKASSGEVRAILAYSNMLFSTHKDHKIRIWTFTVSDSFKSKKLGTLPRKSSILMFPSRGKNTPKHKDSVSCMAYYHSEGLLYTGSHDRTVKAWRVSDRKCVDSFGAHEDNVNAILVNQDDGCLFTGSSDGSVKIWRRVYTEDSHTLTMTLKFQPSPVNALALSCSFNHCFLYSGSSDGMINFWEKERLCYRFNHGGFLQGHRFAVLCLATVGNMIFSGSEDTTIRVWRREEGSCYHECLTVLDGHRGPVRCLAACLEMEKVVMGFLVYSASLDQTFKVWRIKVLPDEKMCMDYSEQCEAPRVKIRDYDMSPVLSPSWVEKKLQGSYFQ* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1036 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 225 256 - -
Vra5g1036 449 Gene3D - 62 171 IPR015943 GO:0005515
Vra5g1036 449 Gene3D - 177 426 IPR015943 GO:0005515
Vra5g1036 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 358 IPR001680 GO:0005515
Vra5g1036 449 SMART WD40_4 75 112 IPR001680 GO:0005515
Vra5g1036 449 SMART WD40_4 312 349 IPR001680 GO:0005515
Vra5g1036 449 SMART WD40_4 356 401 IPR001680 GO:0005515
Vra5g1036 449 SMART WD40_4 264 305 IPR001680 GO:0005515
Vra5g1036 449 SMART WD40_4 218 257 IPR001680 GO:0005515
Vra5g1036 449 SMART WD40_4 115 152 IPR001680 GO:0005515
Vra5g1036 449 SMART WD40_4 177 215 IPR001680 GO:0005515
Vra5g1036 449 CDD WD40 78 401 - -
Vra5g1036 449 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 1 442 IPR045182 -
Vra5g1036 449 Pfam WD domain, G-beta repeat 358 400 IPR001680 GO:0005515
Vra5g1036 449 Pfam WD domain, G-beta repeat 318 348 IPR001680 GO:0005515
Vra5g1036 449 Pfam WD domain, G-beta repeat 269 304 IPR001680 GO:0005515
Vra5g1036 449 Pfam WD domain, G-beta repeat 220 256 IPR001680 GO:0005515
Vra5g1036 449 Pfam WD domain, G-beta repeat 186 214 IPR001680 GO:0005515
Vra5g1036 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 225 256 IPR001680 GO:0005515
Vra5g1036 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 183 224 IPR001680 GO:0005515
Vra5g1036 449 PANTHER OS01G0232200 PROTEIN 1 442 - -
Vra5g1036 449 SUPERFAMILY WD40 repeat-like 77 400 IPR036322 GO:0005515
Vra5g1036 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 348 - -
Vra5g1036 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 183 217 - -
Vra5g1036 449 PRINTS G protein beta WD-40 repeat signature 202 216 IPR020472 -
Vra5g1036 449 PRINTS G protein beta WD-40 repeat signature 244 258 IPR020472 -
Vra5g1036 449 PRINTS G protein beta WD-40 repeat signature 336 350 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1036 Vra-Chr5 16765477 16767130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g1036 186 405 Miscellaneous Gene Families AT5G08390 23.789 1.55e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1036 - - adu:107470716 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1036 5 16765477 16767130 Vra5g1036 5 16765477 16767130 ECH