Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1023 ATGGAATCCCATGCCTCCAATTCAAACTCTCATCCTAACCATAATAACAGCCACCACCACCACCACCCCCCTAGGTTCAAACCCAGCCAACCCATCTCCGACCGAATAGTCCGTGCCCTCCGCCACCGTCTCCGCCTCCTCCACCGTGCCGGCTCCACTTTCTTCATATTCGGTGCCACCGGTAACGTCTACACTGTCACCCTCTCCTCCACCCCCTCCTGCACCTGCCCTGATCGTACAACCCCATGCAAGCACATTCTCTTTGTTTTCATTCGAGTTCTGGGCGTGTCCCTTGATGATGTCTGTCTAAGGAGGAGGACCCTTCGTCCCTGCCAGCTCCAACGCCTCCTCGGCAAGCCCACTTTGCCAGAGGCAGTGGCGGGCGGCACCCTCCGACAGAGGTTTCACCAACTGTTCTTCAATGGAGGGTCAAGGAGGCCAAAGATAGAGACGGAGGAGGGTGCGACGTGCCCGGTTTGCCTTGAGGAAATGGAGAAGGAGCAAAAGCTGGTTGCATGTGGGACATGTCGTAACCCTGTTCATGAAGAGTGCTTGATGAGGTGGAAGAGAACAAGGGGAAGAAGATCGGCTAGTTGTGTGATTTGTAGAGCAAGGTGGAGGGATACGGCGGAGCAGGATCAATATCTGAACCTTTCTGCGTATGTTAGTGAAGATGACATCGGAGAACCTGCTGGGGGGCTCTGCACCGGCTGA 714 0.5546 MESHASNSNSHPNHNNSHHHHHPPRFKPSQPISDRIVRALRHRLRLLHRAGSTFFIFGATGNVYTVTLSSTPSCTCPDRTTPCKHILFVFIRVLGVSLDDVCLRRRTLRPCQLQRLLGKPTLPEAVAGGTLRQRFHQLFFNGGSRRPKIETEEGATCPVCLEEMEKEQKLVACGTCRNPVHEECLMRWKRTRGRRSASCVICRARWRDTAEQDQYLNLSAYVSEDDIGEPAGGLCTG* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1023 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 220 IPR013083 -
Vra5g1023 237 ProSiteProfiles Zinc finger RING-type profile. 157 203 IPR001841 -
Vra5g1023 237 MobiDBLite consensus disorder prediction 1 30 - -
Vra5g1023 237 Pfam SWIM zinc finger 64 92 IPR007527 GO:0008270
Vra5g1023 237 Pfam Ring finger domain 156 203 IPR001841 -
Vra5g1023 237 ProSiteProfiles Zinc finger RING-CH-type profile. 149 209 IPR011016 GO:0008270
Vra5g1023 237 PANTHER RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 1 225 IPR039903 GO:0061630
Vra5g1023 237 SUPERFAMILY RING/U-box 148 209 - -
Vra5g1023 237 ProSiteProfiles Zinc finger SWIM-type profile. 64 94 IPR007527 GO:0008270
Vra5g1023 237 PANTHER - 1 225 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1023 - - var:108321788 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1023 5 16641069 16643575 Vra5g1023 5 16641069 16643575 ECH