Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1008 ATGGACCGCTTGCGTCCTCGGAACCGAGAGGTTTTTTCTGGATTTACAAATGCAGAGATTGAGAAAATGAAAAATTTCTTGAAAGAACCTAAAGGGGTAACATGGGGCAGAGAATTTTACCAAAAACTGGCTGGAAGTTTCAATCGTTCCACTGGTCGTGCGGGGAAGCCTGTCATAAAATGGACAGAGATTGAAGGTTGGTTTCAGGCGAGGCTCCAAGACTTACCACAAGTCCCTAACAGTGAGTTGATGGTTCCTAAATGTAAGGAAGTAGATGTTATGCAAGATCCATCAGAGTTGGAATTTGAAGCAAAATCATCAAAAGACGGGGCATGGTATGATGTTGAGGCATTTCTTGCTCATAGATTTCTTAGCACAGGGGAAGCTGAAGTACATGTCAGATTTGTTGGATTTGGAGCTGAGGAAGATGAGTGGATCAATATTAAAAGTTCAGTCCGCCAACGCTCTATACCATTGGAAAACACGGAGTGTTCAAACCTAAATGTTGGAGACTCTGTCCTATGCTTCCAGGAGAGGAGAGATCAAGCAATTTACTTCGATGCTCAGATTGTAGAGATCCAAAGGAGAATGCATGATATTAGAGGTTGCAGGTGTCTCATCTTAATAAGATATGATCATGACAACAGTGAGGAGAGGGTTCGATTGAGAAGACTTTGCCGCAGAGCAAAATATTAG 696 0.4239 MDRLRPRNREVFSGFTNAEIEKMKNFLKEPKGVTWGREFYQKLAGSFNRSTGRAGKPVIKWTEIEGWFQARLQDLPQVPNSELMVPKCKEVDVMQDPSELEFEAKSSKDGAWYDVEAFLAHRFLSTGEAEVHVRFVGFGAEEDEWINIKSSVRQRSIPLENTECSNLNVGDSVLCFQERRDQAIYFDAQIVEIQRRMHDIRGCRCLILIRYDHDNSEERVRLRRLCRRAKY* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1008 231 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 9 80 IPR039276 -
Vra5g1008 231 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 87 231 IPR039276 -
Vra5g1008 231 Gene3D - 159 230 - -
Vra5g1008 231 PANTHER OS09G0346900 PROTEIN 87 231 - -
Vra5g1008 231 PANTHER OS09G0346900 PROTEIN 9 80 - -
Vra5g1008 231 Pfam SAWADEE domain 99 226 IPR032001 GO:0003682
Vra5g1008 231 Gene3D - 97 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1008 Vra-Chr5 16510895 16514444 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1008 - - gmx:100817690 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1008 5 16510895 16514444 Vra5g1008 5 16510895 16514444 ECH