Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1006 ATGGATGACGATGAGAGAGAGAGGTTACTGGAGAGGGAGAGATTGCAAATCCAGATGATTCGCCAGCTCGATCTCGAGCACCTTGAAGTTGAAGAAGTCGATTACTCCGATGAAGACGAAGACGCCGACCCCGAGGTCGACCCGGATTATGCGTTTTGGCTTTCACAATTAACTTCGTCCGGTTCTCCTCACTCTTCTGCTGAATTCACTTTTGACACTTATATCACGCCGTTGCATACCTATCTCGGTGATGTCGAAGACACGCGTCACAGGACTGCGTTTTTGGACGGTGGAGCTGTATTGAACATTCCGCTCTTTTGTCTCCGAGGAGTCGTACTCTTTCCCGGGGCTACACTTCCCCTTAGAGTTATTGAACCTCGTTTGGTGGCTGCTGTGGAGAGAGCTCTAACTCAAGATGATGTTCCTCATACCATTGCTGTGATTCGAATCCATAGGGACACTGCAACACGTAGGACGAAATCAGCAAGCATTGGGACAACTGCTGAGATTCGGCAATTTGGGCGTCTGGGGGATGGTTCACTGAATGTAGTTACCCGTGGACAACAACGATTTCGCCTAAGACGGTCCTGGAATGATGTGGAAGGAGTGCCTTATGGAGAGATCCAAATTATTGAGGAAGATCTTCCAGTGAGAATTCCAAGAGATGCTTTTGGCAAATTGGCACCATTGAGTAACATGCCCTGTAGTCAAGCTGTCCCACATACGGTGTCTTCACCATATTCTCATGCTAAAATGCAAAGGTCAAAAGATAAGGAAAGTGATTCAGAACCAGATTCAGATGACAGTTTTGAGAATGAACTCTCACCAGTGGAAAGGAAAATCCATCTATCAGTTGTTGGCTCCAGTTATGTAGATGATACAATGGGTGAATCAGCGAACAGCTGCAACCCTAAATTCATGAGTAAGTCAGATCAGGAAATTAGATCCAATCTGGATTCAAGGACTGGGAATTGTTCCACTTCTGGAAAGCAGTCATGGAATGAAGAGCTTAATAGATGTAAAAACATATGTGCCTACACATCTCATAAAATTTCAAAAGCATTTTGGCCCCACTGGACATATCGGATGTTTGACTCTTATTTTCTGGCACAAAGGGCTGCAGATATGTGGAAGCGAATAGTTGGGGTGCCTAACATGGAAAGTCTCGTTAAGAAGCCTGATGTTTTATCATTTCACATAGCTAGTAAAATACCTGTGTCTGAGTCTACAAGGCAGGAGCTTTTGGATATAGATGGCATTGCATACAGATTACGTAGGGAAATTGAATTACTAGAGAGCATTGATCTTATCAGGTGTAAAAGCTGTGAGACTACGATTGCAAAACGAAGTGATATGTTGGTGATGTCGAGTGAGGGTCCTCTTAGTGCTTATGTGAATCCAGGTGGTTATGTGCATGAGATAATGACTCTTTACAAGGCAAATGGTTTATCTCTTCTTGGACCAGCAGTGGCTGAATACAGTTGGTTTCCTGGGTATGCATGGACAATTGCTATTTGTGCTACATGTAAAACCCAAATGGGGTGGCTTTTCACAGCCAGGAGCCAAAAACTAAAACCCAGCACTTTCTGGGGGATTCGCAGCTGTCAACTTGCAGAAGAAAAAACGCGAAAACCTATAGTTTGA 1644 0.4428 MDDDERERLLERERLQIQMIRQLDLEHLEVEEVDYSDEDEDADPEVDPDYAFWLSQLTSSGSPHSSAEFTFDTYITPLHTYLGDVEDTRHRTAFLDGGAVLNIPLFCLRGVVLFPGATLPLRVIEPRLVAAVERALTQDDVPHTIAVIRIHRDTATRRTKSASIGTTAEIRQFGRLGDGSLNVVTRGQQRFRLRRSWNDVEGVPYGEIQIIEEDLPVRIPRDAFGKLAPLSNMPCSQAVPHTVSSPYSHAKMQRSKDKESDSEPDSDDSFENELSPVERKIHLSVVGSSYVDDTMGESANSCNPKFMSKSDQEIRSNLDSRTGNCSTSGKQSWNEELNRCKNICAYTSHKISKAFWPHWTYRMFDSYFLAQRAADMWKRIVGVPNMESLVKKPDVLSFHIASKIPVSESTRQELLDIDGIAYRLRREIELLESIDLIRCKSCETTIAKRSDMLVMSSEGPLSAYVNPGGYVHEIMTLYKANGLSLLGPAVAEYSWFPGYAWTIAICATCKTQMGWLFTARSQKLKPSTFWGIRSCQLAEEKTRKPIV* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1006 547 Pfam ATP-dependent protease La (LON) substrate-binding domain 102 432 IPR003111 -
Vra5g1006 547 Gene3D - 83 211 IPR046336 -
Vra5g1006 547 PANTHER CEREBLON 6 538 - -
Vra5g1006 547 MobiDBLite consensus disorder prediction 238 274 - -
Vra5g1006 547 CDD CRBN_C_like 437 533 IPR034750 -
Vra5g1006 547 ProSiteProfiles CULT domain profile. 434 541 IPR034750 -
Vra5g1006 547 Gene3D Peptide methionine sulfoxide reductase. 430 546 - -
Vra5g1006 547 ProSiteProfiles Lon N-terminal domain profile. 103 433 IPR003111 -
Vra5g1006 547 PANTHER BNAA09G40760D PROTEIN 6 538 - -
Vra5g1006 547 Gene3D - 365 429 - -
Vra5g1006 547 SUPERFAMILY PUA domain-like 102 432 IPR015947 -
Vra5g1006 547 SMART lon_5 102 433 IPR003111 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1006 K11793 - gmx:100779918 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1006 5 16484714 16490001 Vra5g1006 5 16484714 16490001 ECH