Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1005 ATGAGCGTTTCGCATTTCGCTGTTCTGTCGTGTTGTCGTCCACTTTTCGTCCCTTCACTGTCCCGTGCTTCAACGCTTCGTTCTCGCATATGCTGTTGTTCTACTCTCACTGCTACCTCCACAGAGACTCCAACTCCAATCACCGTAAAGAAACGAGTAGTGTCGGGGGTTCAGCCCACGGGCTCAATTCACCTTGGAAACTATTTTGGAGCTATCAAGAATTGGGTTGCCCTTCAGAATGTATATGAAACACTTTTCTTCATTGTGGACCTGCACGCGATTACATTACCATACGACACCCAACAATTATCTAAGGCTACAAGGTCAACTGCTGCTATTTACCTAGCATGTGGAGTAGATCCTTCCAAGGCCTCAGTATTCGCACAGTCTCATGTTCGCGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCGATTGGTTGGCTGAACAAGATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTGGGGGTTGCTCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATCTTGTCCCTGTCGGTGAAGATCAAAAGCAGCATTTGGAGTTGACTCGAGACTTAGCTGAGCGGGTTAATAATTTATATGGAGGGAGAAAGTGGAAGAAATTAGGGGGCCGAGGTGGTAATATATTTAAGGTTCCAGAGCCCCTTATACCTCCAGCTGGTGCCAGGATAATGTCGCTTACGGATGGCCTGTCCAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAACATTCTTGATCCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCAAGCTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTGTTTCAGGAAAGGCGAAAGAGGAAGTTGTTCAGGAATGCCAAAATATGAACTGGGGAACTTTCAAAACCCTTTTGACAGATGCCTTGATTGATCACTTACATCCCATTCAGGTTCGCTATGAGGAAATCATGTCCGATTCAGGTTATTTAGATGAAGTATTGGCAAAAGGTGCTAGAAATGCAGCAGAAATAGCAGATACCACACTTGATAATGTTTATCAAGCAATGGGATTTTTAAGGAGACAGTGA 1179 0.4351 MSVSHFAVLSCCRPLFVPSLSRASTLRSRICCCSTLTATSTETPTPITVKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYETLFFIVDLHAITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFAQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDLVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGNIFKVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSFPSLEFDNSERPECNNLLSIYQLVSGKAKEEVVQECQNMNWGTFKTLLTDALIDHLHPIQVRYEEIMSDSGYLDEVLAKGARNAAEIADTTLDNVYQAMGFLRRQ* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1005 392 PANTHER BNAA04G15180D PROTEIN 18 388 - -
Vra5g1005 392 CDD TrpRS_core 52 340 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vra5g1005 392 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 59 68 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vra5g1005 392 Pfam tRNA synthetases class I (W and Y) 51 343 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Vra5g1005 392 Gene3D HUPs 53 387 IPR014729 -
Vra5g1005 392 PRINTS Tryptophanyl-tRNA synthetase signature 63 79 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vra5g1005 392 PRINTS Tryptophanyl-tRNA synthetase signature 113 132 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vra5g1005 392 PRINTS Tryptophanyl-tRNA synthetase signature 190 211 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vra5g1005 392 PRINTS Tryptophanyl-tRNA synthetase signature 255 265 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vra5g1005 392 TIGRFAM trpS: tryptophan--tRNA ligase 50 388 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Vra5g1005 392 SUPERFAMILY Nucleotidylyl transferase 51 388 - -
Vra5g1005 392 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 18 388 - -
Vra5g1005 392 Hamap Tryptophan--tRNA ligase [trpS]. 50 389 IPR024109 GO:0004830
Vra5g1005 392 Gene3D - 248 358 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1005 K01867 - gmx:100780447 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g1005 5 16470806 16481160 Vra5g1005 5 16470806 16481160 ECH