Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g1000 ATGGCGGTTTCCGATAGTCCAAGCGGTGCCTCCACGCCGCCTCAACAGGAACAAGCCAACAAGTACGGTTTCACGAAGCCTCTCTCTCTCGCGGGTCCCACCGACGCTGATCTCCACCGTAACAACGAGTTGGAGAGGTTCTTGCTCGATTCGGGGCTCTACGAGAGCAATGATGAGTCCGCCGCGAGGAAGGAGGTTCTTCACCGCCTCGATCAGATTGTGAAGAGCTGGGTGAAGCAGTTGACGCGCCAACGTGGCTACACAGATCAGATGGTTGAGGATGCAAACGCAGTTATTTTCACTTTTGGTTCTTACCGACTTGGGGTTCATGGACCTGGAGTTGACATTGACACTTTGTGCATTGGTCCTTCTTATGTGAACCGAGAGGAAGATTTCTTCATCATTTTGCATAACATTCTGGCTGAAATGGAAGAAGTTTCTGAACTTCAACCAGTTCCTGATGCACATGTTCCAGTAATGAAATTCAAATTCCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCACTTTTGGTTGTGCCAGAAGACCTGGATATCTCTCATGGTTCAGTCCTGTATGATGTTGATGAACCAACTGTTCGAAGTCTTAATGGCTGCCGTGTGGCAGATCAAATTCTTAAACTTGTTCCAAATATTGAGCACTTTCGAACTACACTGAGATGCTTGAAGTTTTGGGCTAAAAGACGTGGTGTTTATTCAAATGTTACTGGATTCCTTGGTGGTGTAAATTGGGCTATTTTAGTTGCTCGAATATGCCAGCTTTACCCTAATGCAATCCCTAGTATGTTGGTTTCCCGGTTCTTCAGGGTCTATACACAGTGGCGATGGCCAAACCCTGTAATGCTATGCTCTATAGAAGAGAATGAACTGGGATTCCCTATATGGGATCCTCGTAGAAATCCCCGAGATAGATTTCACACTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCAAGTTACAATGTCTCAGCAAGTACTCTTCGTGTCATGATGGAACAGTTCCGCTATGGCAATAAGATTTGTGATGAAATTGACCTCAATAAAGCCCAGTGGAGCGCACTTTTTCAGCCTTATATCTTTTTTGAGGCGTACAAAAACTATTTACAAGTGGACATAGTTGCATCGGACACTGATGACTTACTAGCGTGGAAGGGCTGGGTAGAATCTCGATTGAGGCTGCTTACCCTAAAGATAGAGCGAGATACAAATGGGATGCTGCAGTGCCATCCTTACCCACATGAGTATATAGACACATCTAAGCCATGTGCACATTCTGCATTTTTCATGGGCTTGCAAAGGAAAGAGGGAGTAAGAGGTCAAGAGGGACAGCAATTTGATATACGTGGAACGGTTGATGAATTTAGACAAGAAATAAATATGTATATCTACTGGAAGCCTGGAATGGAAATTTTTGTTTCTCATGTTCGTCGAAAGCAACTTCCTGCATTTGTTTTTCCTGATGGTTACAAACGCACTAGAATGCCAAGACACATAAGCCATCCGACTGAAAAAACAGGTGATGATGCCACAAAGTGCTACTCTGGATCTGGGCCATCTGAAAGATGCACCAAGAGGAAAAGTTACCCTGAAATGATGGAAAAGAAGCCAGACAAACCAGATAAACGGGCATCTATTAGCCCACAGAGGTTAGAAAGTGTTTCTCCTGAAAGTTGTACTAGTAAATTAGGTGGTACAGCTCAAATGAGTGTTGATAGTATGGAAGGGGTTTGGGTAGCTGGTTCAACGGCCAAGTATGCTAACAGCAATTGTGAAATTAAGTCATCTGATGTGCTCCCAGGAAGTGGACTAAGCTCTGTCGTAGCTGACATGCAGATAAGTGAACCAGGCTTTGTTGACACCACACATGATATGTTGAAACCGAGGAGTGTAGAAGTTCCTAATGAGAATGGAGTTGTCGTTGGGGACAAAGCTCAGGATCTGGCTTTAGATTGCTTGGAAAGTGAAGAAACTGAATCGACTAACAACTTTTCAAACTGTAAAGCGGGTGTCGTCGATATGGATCAGCAACTAGACAAAGCATGTAATTTCATCACAAGGGATGAATGCTCAGATTATGTACCAAATGCCAGCTCCCAGAACCTCAGTTGCGAGCCAGATTTCAGACTCAGAAGTGTTGTAAAATTGAAGATGGGCTAG 2187 0.439 MAVSDSPSGASTPPQQEQANKYGFTKPLSLAGPTDADLHRNNELERFLLDSGLYESNDESAARKEVLHRLDQIVKSWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFIILHNILAEMEEVSELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNIEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHTMPIITPAYPCMNSSYNVSASTLRVMMEQFRYGNKICDEIDLNKAQWSALFQPYIFFEAYKNYLQVDIVASDTDDLLAWKGWVESRLRLLTLKIERDTNGMLQCHPYPHEYIDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYIYWKPGMEIFVSHVRRKQLPAFVFPDGYKRTRMPRHISHPTEKTGDDATKCYSGSGPSERCTKRKSYPEMMEKKPDKPDKRASISPQRLESVSPESCTSKLGGTAQMSVDSMEGVWVAGSTAKYANSNCEIKSSDVLPGSGLSSVVADMQISEPGFVDTTHDMLKPRSVEVPNENGVVVGDKAQDLALDCLESEETESTNNFSNCKAGVVDMDQQLDKACNFITRDECSDYVPNASSQNLSCEPDFRLRSVVKLKMG* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g1000 728 MobiDBLite consensus disorder prediction 503 517 - -
Vra5g1000 728 CDD NT_PAP_TUTase 62 217 - -
Vra5g1000 728 Pfam Nucleotidyltransferase domain 96 172 IPR002934 GO:0016779
Vra5g1000 728 PANTHER POLY A POLYMERASE 7 611 - -
Vra5g1000 728 Gene3D Poly(A) polymerase predicted RNA binding domain 370 485 - -
Vra5g1000 728 PANTHER NUCLEAR POLY(A) POLYMERASE 4 7 611 - -
Vra5g1000 728 MobiDBLite consensus disorder prediction 1 23 - -
Vra5g1000 728 Gene3D Beta Polymerase, domain 2 55 211 IPR043519 -
Vra5g1000 728 SUPERFAMILY PAP/OAS1 substrate-binding domain 218 367 - -
Vra5g1000 728 SUPERFAMILY Nucleotidyltransferase 20 216 IPR043519 -
Vra5g1000 728 MobiDBLite consensus disorder prediction 503 575 - -
Vra5g1000 728 MobiDBLite consensus disorder prediction 1 26 - -
Vra5g1000 728 Pfam Poly(A) polymerase central domain 23 366 IPR007012 GO:0004652|GO:0043631
Vra5g1000 728 Pfam Poly(A) polymerase predicted RNA binding domain 370 427 IPR007010 GO:0003723|GO:0043631
Vra5g1000 728 Pfam Poly(A) polymerase predicted RNA binding domain 433 502 IPR007010 GO:0003723|GO:0043631
Vra5g1000 728 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 370 496 IPR011068 GO:0003723|GO:0016779|GO:0031123
Vra5g1000 728 MobiDBLite consensus disorder prediction 557 575 - -
Vra5g1000 728 MobiDBLite consensus disorder prediction 533 555 - -
Vra5g1000 728 Gene3D - 23 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g1000 Vra-Chr5 16432623 16438706 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g1000 K14376 - gmx:100802620 1332.01