Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0999 ATGGCGTCCAGCGATTCCGATTCGCAGTTGAAGATCGTCCATGGCGACGCTGGTTACATTCTCGAAGACGTTCCTCATTTCACCGATTACATTCTAAATCTTCCCACTTATCCGAATCCGCTTCGGTCCAATCCTGCTTACTCGGTTGTTAAGCAGTATTTCGTGCATATGGACGACACTGTGCCTCAGAAGGTTGTTGTTCACAAGGATGGTCCAAGAGGTGTACATTTTAGACGTGCAGGCCCTCGACAAAAGGTATACTTTAGATCGGATGATGTGCACGCATGCATTGTCACTTGCGGCGGACTTTGCCCTGGCCTCAACACTGTCATAAGGGAAATTGTCTGTGGTCTTTCTTACATGTATGGTGTTAACAAAGTCCTTGGCATAGATGGAGGTTATAGAGGTTTTTATTCCAAGAACACCATTACTTTAACACCTAAGGTGGTCAATGACATCCATAAGCGTGGAGGTACAATTCTTGGGACGTCACGAGGGGGGCATGATACCAGCAAGATAGTTGACAGCATCCAGGATCGAGGAATTAATCAGGTTTATATTATTGGAGGAGATGGTACACAGAGAGGAGCTACTGTGATTTATGAGGAAGTTAGACGGCGGGGCCTGAAAGTAGCAATTGCTGGAATTCCCAAAACCATAGATAATGACATCCCGGTTATTGACAAATCGTTTGGTTTTGATACTGCGGTCGAGGAGGCTCAACGTGCCATCAATGCAGCACATGTTGAAGCTGAAAGTATTGAGAATGGCATTGGTGTTGTAAAGCTAATGGGACGTTATAGTGGCTTTATTGCTATGTATGCTACTCTTGCTAGCAGAGATGTGGACTGTTGCTTGATTCCAGAGTCACCCTTCTACCTTGAAGGAAAGGGTGGACTTTTTGAATTTATTGAGAAAAGGCTGAAAGAAAATGGGCATATGGTCATAGTCATAGCTGAGGGAGCAGGACAAGATCTTCTTACTGAAAGCATGCAAGACATGGACCAGAAAGATGCTTCTGGAAACAAACTACTTCAAGATGTTGGTTTATGGATATCTCATAAGATCAAGGACCACTTTGCAAGGAAGGATAAGATTGCCATCAATCTTAAATATATAGATCCAACCTACATGATCCGAGCAATTCCAAGCAATGCATCAGATAATGTCTACTGTACACTTCTTGCTCAGAGTGCAGTGCATGGTGCAATGGCAGGGTATACCGGATTTACGTCTGGACTGGTCAATGGAAGACATACTTATATCCCATTCAATAGAATCATTGAGAGGCAGAACAAAGTTGTGATTACTGACAGAATGTGGGCAAGACTCCTTTCTTCCACCAACCAGCCAAGCTTTTTGAGCCCGAAAGATTTAGATGAAGCCAAGAAAGCAGAACAACCTCCGAGTCAATTCTTAGAAGGGAGCAGTTGCAATGATATTGGTGAAGCTGAGAAAAAAGAAAACACGTTCAGTCAATTGTTAGAAGGGGACAATTTCAAAGATCAACAACAATTTGAAAACCATGCAGACAATGGTATCGAGACGATAAATTAG 1557 0.4316 MASSDSDSQLKIVHGDAGYILEDVPHFTDYILNLPTYPNPLRSNPAYSVVKQYFVHMDDTVPQKVVVHKDGPRGVHFRRAGPRQKVYFRSDDVHACIVTCGGLCPGLNTVIREIVCGLSYMYGVNKVLGIDGGYRGFYSKNTITLTPKVVNDIHKRGGTILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQRGATVIYEEVRRRGLKVAIAGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESIENGIGVVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLEGKGGLFEFIEKRLKENGHMVIVIAEGAGQDLLTESMQDMDQKDASGNKLLQDVGLWISHKIKDHFARKDKIAINLKYIDPTYMIRAIPSNASDNVYCTLLAQSAVHGAMAGYTGFTSGLVNGRHTYIPFNRIIERQNKVVITDRMWARLLSSTNQPSFLSPKDLDEAKKAEQPPSQFLEGSSCNDIGEAEKKENTFSQLLEGDNFKDQQQFENHADNGIETIN* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0999 518 Gene3D - 90 279 - -
Vra5g0999 518 PIRSF ATP_PFK_TP0108 1 458 IPR012004 GO:0003872|GO:0005524|GO:0006096
Vra5g0999 518 Coils Coil 237 257 - -
Vra5g0999 518 PRINTS ATP-dependent phosphofructokinase family signature 97 116 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vra5g0999 518 PRINTS ATP-dependent phosphofructokinase family signature 181 197 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vra5g0999 518 PRINTS ATP-dependent phosphofructokinase family signature 214 231 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vra5g0999 518 PRINTS ATP-dependent phosphofructokinase family signature 232 250 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vra5g0999 518 PRINTS ATP-dependent phosphofructokinase family signature 253 269 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vra5g0999 518 PRINTS ATP-dependent phosphofructokinase family signature 310 322 IPR022953 GO:0003872|GO:0006002|GO:0006096
Vra5g0999 518 Pfam Phosphofructokinase 96 401 IPR000023 GO:0003872|GO:0006096
Vra5g0999 518 PANTHER - 2 484 - -
Vra5g0999 518 MobiDBLite consensus disorder prediction 497 518 - -
Vra5g0999 518 Hamap ATP-dependent 6-phosphofructokinase [pfkA]. 24 454 IPR012004 GO:0003872|GO:0005524|GO:0006096
Vra5g0999 518 PANTHER ATP-DEPENDENT 6-PHOSPHOFRUCTOKINASE 2 484 - -
Vra5g0999 518 SUPERFAMILY Phosphofructokinase 28 461 IPR035966 GO:0003872|GO:0006096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0999 Vra-Chr5 16422035 16430326 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0999 K00850 - gmx:100818755 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0999 5 16422035 16430326 Vra5g0999 5 16422035 16430326 ECH