Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0988 ATGGCGTCTTCTAAGAGGCCAAATGTAGAGCCCAACGGGAAAGGGAAACGCCAAAAATCTTCCGGTGGTTTTTCGTCGTTGGATGTTTCTCCAGGGAGTGCGGTGTTCCGTTTGCTCTGTCCCGTTTCAAGAATTGGCAGTGTTATTGGAAAAGGTGGTGCCATCATTTCACAAATTCGCCAAGAAAGTGGTGTGAAGGTTAAGATTGAGGAAGCTATACCTGGGTGTGATGAAAGGGTTATCACCATCTCAGGTTCTGATAAAGGTTCAGAACCTGAAGAAGTTCATGCAGAGCAGGTAAGGGAGGTTAATAATGATGATGCTGGAATCGAGGGGAAAGGGGACGAGGAGGAGAGGGATGGTGGTGATGGTGATGATAATGAAGAAAAAGAAGATAAAAGTTCGGTTATCGTTCAAGATTCTCCCAGTGAAAAGGGGAATTCCGCCATTCGGAAGGCAATATCATTAGTTTTTGAGAGAATGGTCGAGGGAGTAGAGGAGATGAGTGAAGGGGATGAAGAAAGTAATAAATCTTCTACCCTTGTTTTTAGGTTACTTATTCTTACTACTCAAGTTGGATGCCTTCTGGGAAAGGGTGGTAGTGTGATTAAGAGAATGGCAGCTGAAAGTGGTGCACATATTCGGATCCTTCCTAAAGACAAACTTCCAGCGTGTGCATCAGGTTCTGATGAGATAGTTCAGATCTCAGGAGGAGTAGATGTTGTCAGGAAAGCTCTTCAATCTGTTTCTCATCAACTATTGGAAAATCCACCACGGGATCATGAATTGTCCGCTAATTTTAACGGGTCTTCTCATTCATCTGGACAATTCGCACCTCACAGCCGTTCTTTTGGTGGTCAACCTTTTGGTGCTGCCCATGATATTTCTATTTTTCATTCTGCCCCTCCATTGATGTCCAAGTTTCATGAAGCTGCCATTCACGGTCGCACGAGACCTATGCAGGAAATGCTTACTTTTCGTTTATTGTGTCCTGTAGAAAGGGCAGGAAATGTAATTGGTAAAGGTGGAACAATCATAAAGACACTTCAGCAAGAGACAGTAAGTGAAATCAAGATTGTAGAAAGTCCTCCAGATTCAGAGGATTGTGTTATTGTTATATCTGGTCCAGCGCACCCAGATGATAGAGTATCCCCTGTGCAAGAAGCTGTATTTCGAGTGCAAACTAGAATAGCCAAGCCTATGCCCGATGCCAAAGAACATACGATGTTAGCAAGGTTTCTTGTTTCTTCCAATCAAATAGGTTGTCTCCTCGGCAAGGGTGGTTCCATCATAACTGAAATGAGGAAAAAATCAGGGGCCCATATCCGTATATTAGGAAAGGATAAGGTTCCAAAGTGTGCTTCAGAAGATGAAGAAGTAATTCAGGTAAACGGAGAAATTGAGGCAGTGCATGATGCTCTCATGCAAATAACTACTAGATTAAAGCATCATTTCTTCCGTGATTCACATCCATCCGTCAATTATCCTTCAAATTCTCCATTTGTCGATCAACTTCCTCCATTCCCACCTTATTTAGGAAGACGGGGACTGTCACCTCCTGGGATGTATTCTGACCTTGGTCCTCCACCTTATGCGGGTTTTCCTCTTGATGACCGTCCTCCATTTTTGAATAACATACACAGACCAGGCATTCCTCCTCACATATCTGAAAGGAAGCCTTGGGGTCCCCAGGGGGTACTTGAAGGTGGCTCACGCATTGGCTTGCCAGACTTTCCAGGAGGTCCTCCTAGAAGAATTTCAGGGTTTGCAGGGGGTAGCCAACCAATTATCACAAGTACCACTGTTGAAGTTGTTGTTCCTCGAGCACTGGTGCCTGTGATATATGGGGAAGATGGTGAATGCCTGAAGCAAATACTTCAGATCTCTGATGCAAATATTACTATAACTGATCCAAAACCCGGAGCTGTGGAAACTAAAATTATAATATCTGGAACCCCTGAGCAAACTCATGCAGCCCAAAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAGTCTGGTTGA 2025 0.4405 MASSKRPNVEPNGKGKRQKSSGGFSSLDVSPGSAVFRLLCPVSRIGSVIGKGGAIISQIRQESGVKVKIEEAIPGCDERVITISGSDKGSEPEEVHAEQVREVNNDDAGIEGKGDEEERDGGDGDDNEEKEDKSSVIVQDSPSEKGNSAIRKAISLVFERMVEGVEEMSEGDEESNKSSTLVFRLLILTTQVGCLLGKGGSVIKRMAAESGAHIRILPKDKLPACASGSDEIVQISGGVDVVRKALQSVSHQLLENPPRDHELSANFNGSSHSSGQFAPHSRSFGGQPFGAAHDISIFHSAPPLMSKFHEAAIHGRTRPMQEMLTFRLLCPVERAGNVIGKGGTIIKTLQQETVSEIKIVESPPDSEDCVIVISGPAHPDDRVSPVQEAVFRVQTRIAKPMPDAKEHTMLARFLVSSNQIGCLLGKGGSIITEMRKKSGAHIRILGKDKVPKCASEDEEVIQVNGEIEAVHDALMQITTRLKHHFFRDSHPSVNYPSNSPFVDQLPPFPPYLGRRGLSPPGMYSDLGPPPYAGFPLDDRPPFLNNIHRPGIPPHISERKPWGPQGVLEGGSRIGLPDFPGGPPRRISGFAGGSQPIITSTTVEVVVPRALVPVIYGEDGECLKQILQISDANITITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMSERESG* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0988 674 Pfam KH domain 36 88 IPR004088 GO:0003723
Vra5g0988 674 Pfam KH domain 601 664 IPR004088 GO:0003723
Vra5g0988 674 Pfam KH domain 184 249 IPR004088 GO:0003723
Vra5g0988 674 Pfam KH domain 325 377 IPR004088 GO:0003723
Vra5g0988 674 Pfam KH domain 412 477 IPR004088 GO:0003723
Vra5g0988 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 169 260 IPR036612 GO:0003723
Vra5g0988 674 PANTHER KH DOMAIN-CONTAINING PROTEIN HEN4-LIKE 3 534 - -
Vra5g0988 674 MobiDBLite consensus disorder prediction 254 280 - -
Vra5g0988 674 CDD PCBP_like_KH 35 86 - -
Vra5g0988 674 Gene3D - 122 258 - -
Vra5g0988 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 323 407 IPR036612 GO:0003723
Vra5g0988 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 599 668 IPR036612 GO:0003723
Vra5g0988 674 CDD PCBP_like_KH 325 394 - -
Vra5g0988 674 Gene3D K Homology domain, type 1 322 400 IPR036612 GO:0003723
Vra5g0988 674 MobiDBLite consensus disorder prediction 80 147 - -
Vra5g0988 674 MobiDBLite consensus disorder prediction 1 30 - -
Vra5g0988 674 CDD PCBP_like_KH 412 478 - -
Vra5g0988 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 30 87 IPR036612 GO:0003723
Vra5g0988 674 Gene3D K Homology domain, type 1 598 671 IPR036612 GO:0003723
Vra5g0988 674 MobiDBLite consensus disorder prediction 263 280 - -
Vra5g0988 674 SMART kh_6 32 102 IPR004087 GO:0003676
Vra5g0988 674 SMART kh_6 598 668 IPR004087 GO:0003676
Vra5g0988 674 SMART kh_6 407 482 IPR004087 GO:0003676
Vra5g0988 674 SMART kh_6 179 254 IPR004087 GO:0003676
Vra5g0988 674 SMART kh_6 322 398 IPR004087 GO:0003676
Vra5g0988 674 CDD KH-I 601 664 - -
Vra5g0988 674 CDD PCBP_like_KH 182 250 - -
Vra5g0988 674 ProSiteProfiles Type-1 KH domain profile. 180 249 - -
Vra5g0988 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 404 486 IPR036612 GO:0003723
Vra5g0988 674 ProSiteProfiles Type-1 KH domain profile. 599 663 - -
Vra5g0988 674 ProSiteProfiles Type-1 KH domain profile. 33 102 - -
Vra5g0988 674 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 534 - -
Vra5g0988 674 Gene3D K Homology domain, type 1 33 101 IPR036612 GO:0003723
Vra5g0988 674 ProSiteProfiles Type-1 KH domain profile. 408 477 - -
Vra5g0988 674 MobiDBLite consensus disorder prediction 89 117 - -
Vra5g0988 674 ProSiteProfiles Type-1 KH domain profile. 323 390 - -
Vra5g0988 674 Gene3D K Homology domain, type 1 406 484 IPR036612 GO:0003723
Vra5g0988 674 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0988 Vra-Chr5 16299850 16304493 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0988 K21444 - gmx:100777433 1092.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0988 5 16299850 16304493 Vra5g0988 5 16299850 16304493 ECH