Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0987 ATGGATTCTGATCAGTTTCAGAAAAACAGCATGTACGTAGAAACCCCTGAAGCTTTTGGTGAAGGTGGCAAAGACTTCGACGATGATGGACGTGTCAAGAGAACTGGAACATGGATAACTGCGAGTGCTCATATCATAACCGCAGTTATAGGATCTGGAGTGTTGTCACTTGCATGGGCGATTGCACAATTGGGTTGGGTGGCTGGCCCTGCGGTTCTCTTCGCCTTCTCTTTCATCACATACTTCACATCAACTCTTCTTGCAGACTGTTATCGTACACCTGACCCTGTTCATGGCAAGAGAAACTACACCTATTCCGACGTTGTCAAATCCGTCTTAGGTGGGAGAAAATTCCAACTGTGTGGATTAGCTCAGTACATAAATCTGGTCGGTGTAACTATCGGATACACAATAACAGCTTCAATAAGTATGGTGGCGGTGAAAAAATCAAACTGTTTACACAAACATGGACACCATGCGAAGTGCTTCACGTCAAACAACCCTTTCATGATTATCTTTGCGTGCATCCAAATCGTGCTTAGTCAGATACCGAATTTCAGCAAGCTCTGGTGGCTGTCTATTGTTGCAGCAGTCATGTCTTTTGCTTATTCTTCCATTGGACTCGGCCTCTCTGTTGCCAAAGTTGCCGGTGGCGGAAATCATCATGTACGGACAACCTTAACTGGGGTGCAAGTTGGTGTGGATGTTACAGGATCAGAGAAGGTGTGGAGGACCTTTCAAGCTATTGGTGACATTGCCTTTGCTTACGCTTATTCTAATGTTCTCATTGAGATACAGGATACCCTGAAATCGAGTCCTCCGGAGAACAGGGTCATGAAAAGATCAAGCTTGATTGGCATCACGACAACAACCTTGTTCTATGTACTATGTGGCTGCTTAGGTTATGCAGCATTTGGAAACGATGCACCAGGAAATTTCCTCACCGGGTTCGGCTTCTACGAGCCCTTTTGGCTCATAGACTTTGCTAACATCTGCATAGCCGTGCACTTGGTTGGAGCATATCAGGTTTTCTGTCAGCCAATATTTGGGTTCGTGGAGAACTGGAGTAAGGAAAGGTGGCCCAACAGTCAATTTGTTAATGGGGAGTATACAGTGAAGTTGCCATTGTGTGGAAGCTACAGTGTGAACTTTTTCAGGGTGGTATGGAGAACAACATATGTTATCATCACTGCTGTCTTAGCTATGCTGTTTCCATTCTTCAATGACTTCCTAGGACTGATTGGTTCGGTGTCCTTCTGGCCATTGACCGTTTACTTCCCCATAGAGATGTACATTAAGCAGTCAAAGATGCAAAAGTTTTCCTTCACATGGACATGGCTCAAGATATTGAGCTGGCTTTGCTTGATTGTTTCCATTATTTCAGCTGTTGGCTCCATTCAAGGCCTCGCTCAAGATCTCAAGAAATATCAGCCCTTTAAAGCCCAGCAATAG 1452 0.4477 MDSDQFQKNSMYVETPEAFGEGGKDFDDDGRVKRTGTWITASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVLFAFSFITYFTSTLLADCYRTPDPVHGKRNYTYSDVVKSVLGGRKFQLCGLAQYINLVGVTIGYTITASISMVAVKKSNCLHKHGHHAKCFTSNNPFMIIFACIQIVLSQIPNFSKLWWLSIVAAVMSFAYSSIGLGLSVAKVAGGGNHHVRTTLTGVQVGVDVTGSEKVWRTFQAIGDIAFAYAYSNVLIEIQDTLKSSPPENRVMKRSSLIGITTTTLFYVLCGCLGYAAFGNDAPGNFLTGFGFYEPFWLIDFANICIAVHLVGAYQVFCQPIFGFVENWSKERWPNSQFVNGEYTVKLPLCGSYSVNFFRVVWRTTYVIITAVLAMLFPFFNDFLGLIGSVSFWPLTVYFPIEMYIKQSKMQKFSFTWTWLKILSWLCLIVSIISAVGSIQGLAQDLKKYQPFKAQQ* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0987 483 Pfam Transmembrane amino acid transporter protein 34 469 IPR013057 -
Vra5g0987 483 PANTHER AMINO ACID TRANSPORTER, TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN-RELATED 13 476 - -
Vra5g0987 483 PANTHER OS05G0424000 PROTEIN-RELATED 13 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0987 Vra-Chr5 16291028 16295173 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0987 7 481 Organic Solute Cotransporters AT5G49630 76.200 0.0 758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0987 K24917 - gmx:100777963 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0987 5 16291028 16295173 Vra5g0987 5 16291028 16295173 ECH