Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0978 ATGTGTAATCCCAAACCATCCTCATCATCCCCATTTCTGTGTCCCGATCCCAAACTCAAAAATCATCGTCAACTTCAGGATGATGATGAACTTCACAGATGCCCAACTCCCAACGAGGTCATAGCAGAAATTAAGGCACTGGGGAAGATATCAGTCCCAACAGCACTCACCGGGTTGCTCTTATATTCAAGAGCCATGATCTCAATGCTGTTCTTAGGCTACCTTGGTGAGATGGAGCTGGCCGGAGGCTCTCTGTCTATCGGCTTCGCCAACATCACCGGCTACTCCGTCATCTCAGGTCTTGCCATGGGAATGGAACCCATTTGCGGCCAAGCCTACGGCGCAAAACAATGGAAAACGCTGGGCTTGACCCTCCAGAGAACCGTCCTCCTCCTCCTCTCCACCTCCATCCCCATCTCCCTCACCTGGCTCAACATGAAGTCCATACTCTTATGGTGCGGCCAGGACCACCAGATATCCTCCACCGCACAAACCTTCATCCTCTTCTCCATCCCAGACCTCTTTCTCCTCTCCCTCCTCCACCCTCTCCGCATCTACCTCCGTACCCAAAGCATCACATTGCCCCTAACCTACTGCTCCGCCCTCTCCCTCCTCCTCCACCTCCCCCTCAACTTCCTCCTAGTCGTTCACTTCAAAATGGGAGTCTCCGGCGTCGCCATAGCCATGGTATGGACCAACCTCAACCTCTTCCTCTTCCTCTCCTCCTTCGTCTACTTCTCCGGGGTCTACAAAGACTCGTGGGTCCCACCCAGCTCCGACTGCCTCCGTGGCTGGTCCTCTCTACTTGCACTTGCGGTTCCCACCTGCGTCTCTGTCTGCCTCGAATGGTGGTGGTACGAACTCATGATAATCCTCTGCGGGCTTCTCCTCAACCCCAAAGCCACCATTGCTTCCATGGGCATCCTCATCCAAACCACCTCCCTCGTCTACGTCTTCCCCTCCTCCCTCAGCCTCGGCGTCTCCACCCGCGTCGGCAACGAGCTCGGCGCCAACCGCCCCGCCAGGGCCCGCATTTCCATGATAGTCTCACTCGCCTGTGCCGTCGCGCTCGGCCTCGCCGCCATTGTATTCACCACCCTCATGCGACATCAATGGGGCAGATTCTTCACTTCTGACACCGAAATTCTTGACCTCACTGCCTCCGTGCTCCCCATCGTCGGCCTCTGCGAGCTCGGCAACTGCCCGCAGACCACGGGCTGCGGCGTCCTCCGCGGCAGCGCCAGGCCCACCGTCGGAGCCAACATCAACTTGGCCTCGTTTTATTTGGTGGGCATGCCCGTCGCTGTTCTCCTCGGGTTCGTCGTGAAAATGGGTTTTCCTGGGCTCTGGCTTGGGTTGCTTGCGGCTCAAGCCTCTTGCGCTTCTCTCATGATATTCGTTCTCTGCACCACTGACTGGAATGCTCAAGTGCAAAGAGCCAATGACCTTACCACTGTTAATTCATCTTCTCCCAAGTTACCCACCACTCTCACGCCAACAACCTCAAACCATGTTTCTCTTCCAGAGCCTCTTGTCACCCATGATCACCTTCCCCACACACCCTCTCTTGAAACAGACCCTCTCATTATACACACCGTAAATTAA 1605 0.5576 MCNPKPSSSSPFLCPDPKLKNHRQLQDDDELHRCPTPNEVIAEIKALGKISVPTALTGLLLYSRAMISMLFLGYLGEMELAGGSLSIGFANITGYSVISGLAMGMEPICGQAYGAKQWKTLGLTLQRTVLLLLSTSIPISLTWLNMKSILLWCGQDHQISSTAQTFILFSIPDLFLLSLLHPLRIYLRTQSITLPLTYCSALSLLLHLPLNFLLVVHFKMGVSGVAIAMVWTNLNLFLFLSSFVYFSGVYKDSWVPPSSDCLRGWSSLLALAVPTCVSVCLEWWWYELMIILCGLLLNPKATIASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANRPARARISMIVSLACAVALGLAAIVFTTLMRHQWGRFFTSDTEILDLTASVLPIVGLCELGNCPQTTGCGVLRGSARPTVGANINLASFYLVGMPVAVLLGFVVKMGFPGLWLGLLAAQASCASLMIFVLCTTDWNAQVQRANDLTTVNSSSPKLPTTLTPTTSNHVSLPEPLVTHDHLPHTPSLETDPLIIHTVN* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0978 534 PANTHER MULTIDRUG RESISTANCE PROTEIN 24 497 - -
Vra5g0978 534 Pfam MatE 53 213 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g0978 534 Pfam MatE 274 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g0978 534 TIGRFAM matE: MATE efflux family protein 54 450 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g0978 534 CDD MATE_eukaryotic 43 479 IPR045069 GO:0042910|GO:1990961
Vra5g0978 534 PANTHER PROTEIN DETOXIFICATION 24 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0978 Vra-Chr5 16155186 16157328 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0978 K03327 - gmx:100788339 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0978 5 16155186 16157328 Vra5g0978 5 16155186 16157328 ECH