Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0977 ATGGCTTCGTTTCGGCGGACACTGTCGCCGGCGTATCCTGATCGCCAGTACCTAAACGGTTCGTTTCCGGTTTCCTCTCCAACGCATAAGCTCGCTTCCGGGAACGCCAAATACTCGTCGCCGTTGCCGGCTCTTGCGGCGGCGTTTCGGCGACTCGTCGGCGGTGTGTTCACGCGCCGGCACGGTCGGAAAGGGCAGTGGAGACGGGCAGCGTTCAGGTGCGTTCTGTGTTTCTTCGTAGGGTTCTTGCTAGGCATGTTTCCGTTTGGCCACATGGCGGAGGACATTCGGTCGCACGAAATCTCGTTCGAGATGAAGCCTCCGCTGCCGCACGCGAACAACGCGCAGCAGCTCCTCCAGGAAGATCGCGTTCTGCGGAATCGCGTCGATGAGGGTTTCGTGATCGATCCGGTGAGCCTAAGCGCGGAGAGGGAGAGGCAGGGTGATAGGTTCGATCTTGTGCCGAGGAAGCCGCTGATTGTGGTGACGCCGACGTATGGCCGAGCTTTTCAGGCGTATTTCCTGAACCGGTTGGGGCAGGTGTTGCGGCTGGTGCCGCCGCCGGTGGTGTGGATTGTGGTGGAGATGAAGGCGGCGTCGATGGAGACGGCGGAGATACTGAGGAAGACGGGAGTGATGTATAGGCATTTGGTGTGCAATAAGAATTTGACGGATGTGAAGGACAGGGGGGTTCATCAGAGGAACACAGCGTTGGAACACATTGAGCGTCATAGGCTCGATGGGATTGTTTACTTTGCGGACGATGATAATGTGTATTCTCTTGAGTTGTTTGACTCCTTGAGAGACATCAGCCGCTTTGGCACTTGGCCTGTTGCCATGCTTGCGCCAAGCAAGAACAAGGCCATTTTGGAGGGTCCTGTATGCAATGCAAGCCAAGTGATCGGATGGCATACAAATGAGAAAAGTAAAAGACTTCGAAGATTTCATGTTGATATGTCTGGATTTGCATTCAACAGCACAATCTTGTGGGATCCAAAACGATGGAGGCGCCCGTCTTTAAATCCCATTAGACAGTTAGACACAGTGAAGGAAGGTTTTCAAGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGCTCACCTCATGGTTGTTCCAAAATAATGAATTGGCATCTTCATTTGAGTGTTCATAATACAGTTTACCCAAAAGGTTGGGTGCTTCAGAAAAACCTTGATGCTATCATACCTGTCAAGTAA 1233 0.5215 MASFRRTLSPAYPDRQYLNGSFPVSSPTHKLASGNAKYSSPLPALAAAFRRLVGGVFTRRHGRKGQWRRAAFRCVLCFFVGFLLGMFPFGHMAEDIRSHEISFEMKPPLPHANNAQQLLQEDRVLRNRVDEGFVIDPVSLSAERERQGDRFDLVPRKPLIVVTPTYGRAFQAYFLNRLGQVLRLVPPPVVWIVVEMKAASMETAEILRKTGVMYRHLVCNKNLTDVKDRGVHQRNTALEHIERHRLDGIVYFADDDNVYSLELFDSLRDISRFGTWPVAMLAPSKNKAILEGPVCNASQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWRRPSLNPIRQLDTVKEGFQETTFIEQLVEDESQMEGSPHGCSKIMNWHLHLSVHNTVYPKGWVLQKNLDAIIPVK* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0977 410 CDD GlcAT-I 157 387 IPR005027 GO:0015018|GO:0016020
Vra5g0977 410 PANTHER GALACTOSYLGALACTOSYLXYLOSYLPROTEIN 3-BETA-GLUCURONOSYLTRANSFERASE BETA-1,3-GLUCURONYLTRANSFERASE 1 407 IPR005027 GO:0015018|GO:0016020
Vra5g0977 410 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 158 403 IPR029044 -
Vra5g0977 410 PANTHER GLYCOSYLTRANSFERASES 1 407 - -
Vra5g0977 410 SUPERFAMILY Nucleotide-diphospho-sugar transferases 158 403 IPR029044 -
Vra5g0977 410 Pfam Glycosyltransferase family 43 178 386 IPR005027 GO:0015018|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0977 Vra-Chr5 16128545 16132869 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0977 1 410 Glycosyltransferase AT1G27600 61.951 0.0 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0977 K20869 - gmx:100809892 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0977 5 16128545 16132869 Vra5g0977 5 16128545 16132869 ECH