Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0976 ATGGCCGCTCCTACCAGAGACCAAGCCCTCTCTCTTCTCGCTACGGCCAATAACCACGGCGACCTTGCCGTTAAAACCTCATCGCTCAAACAAGCAAAGGACCTTCTTCTCTCCATCGACCATTCTCTCGCCGCCGACCTCTTCCCTTACTTGCTCGAGCTTCAGTCTTCTCCCGAAAGCCTCGTTCGCAAATTGCTCATTCAGATAATCGAGGAGATTGGTTTTAGAGCAGTTGAGCACTCTCCTACGCTGATATCTGTACTATTAACATTTTTACGAGACAGTGATGTAATTGTTGTAAAGCAGTCTATTGTTAGTGGCACAAATATCTTTGGTAGTGTTTTTGAGGAGTTGATTTTGCAGTTTCAACAAAATGGTAAAGTTGAGAGGTGGCTAGAAGATACTTGGATCTCAATGCTTAAGTTCAAGGATGCTGTTTTTGGGATTGCTGTGGAGCCTGGTTCTGTTGGAATAAAGTTGCTGGCACTGAAATTCCTTGAAATGTTTGTATTACTATTTGCATCTGACATCAGTGATTCTGAGAAATTAGCCACAAAAGGAGGTAGACCAGCTTTTAATGTGTTGTGGTTGGTTGGTGGTCATCCTCACCCTGTTCTTGATCCAGTGGTGCTCATGTCAGAAGGAAATAGGACTCTTGGCATTCTATTAAATTTATTGCAGTCTGTTGGCACTCTTCCTGGTTGCTTGACTATTACTGTTGTAAATTGTTTAGCAGCCATTGCCAGAAAAAGGCCACAGCACTATGATACTATTCTTTTAGCATTGCTTGAATTTGATCCAAATGTTCAAACAGCGAAGGGATGTCACGTTGCTAGTATTCAGTACTCCTTAAGAACAGCTTTTTTGGGATTTCTTAGGTGCACTTATTCTCCAATACTAGAGTCAAGAGAAAGACTAATAAGGAGCCTGCGAGCTATGAATGCAGGGGATGCTGCAGATCAGGTGCTTAGGCAAGTTGACAAAATGATTAAAAATGGTGATCGTCCTACTCGTGATGCACGAGTTAACAAGGATGAGCAACCATCAATTCAGTTATCTGTTTCAGGGGAATTATCCAGAAAAAGACCTGTTCCTCTAGATAATGAACAAATGACCAATGGTCATGAAAGCATATCTAAACGGATTCGTTCTGGTCCTGACTCTCAGTCTACTTTACCAGCTAAAATAAATGATCCTGGACAAGATCCTAACTCTGTTAATGGAGTATCACCTAATGTTCCTTTGCTAGATAGTGAAATGACTGCTGTAGAGCAAATGATTGCTGTGATTGGTGCTTTACTTGCTGAAGGAGAGAGAGGTGCCGAATCTCTTGAGATCCTCATTTCAAAGATTCATCCTGATCTACTGGCTGATATTGTCATAACTAATATGAAGCATTTGCCTAAGACTCCCCCACCACTGTCAAGGATTGGGAATTTACCAGCAACACGACAATTAAACTCCCAAGTCAGTCAATCACATGTTATAGCAACTTCTGTTTCAATAAATTCTGTCCAATCCGTGTCTGGTACTGGCCAAGCTGTGTTGCCTTCAACTACGGCCGCTGTTATTGGCACTAGTTCATTGCCGTCTGACACGTCTATCTTCAGTAACCTGCCTGCTGATTCTAAACGTGATCCTCGGCGGGATCCCCGTCGCCTTGATCCCCGGCGTGTTGTGGTAGCTCCTGGAGGAGCAACTGTATCAGTTACAGATGATAATGGAGCTGCAAAAATTGAGTTTGATGAACCTGTTTCTTCAATTAAACCTGTTTCACTTCCTGTTATTGCTGATGACAATACTCCATCAGATTTAACAGTCAAAATAAAAAATGATGATATGATCTCTGAAGGTGCAGCTGATCAGGTAACTCCTAAAACAGAGGTTCAGGAAAGGCCTGGAGATATTCATCAGATTGCAGAAGCAGATACTTCCTTTGGTCCTTCAGTCTCATCCACTGATTTAAGAGAGGAGGATCCGAGTTCAGTGAATCTGTCAGATGACATTGAAGCAATTGGTACAGATTCATCATCCATTTCAGAGTTTGATCAGTTTTCTCTTGATGTTCAAGTTGAACCGACATTGGAAGATACCTGTCTGGAGTTACCACAGCTTCCACCTTATGTTGAACTATCCAAAGAACAGCGAAGTATAGTGAAAAACATGGCTGTTAGGCACATAATCAATTCATACAAACATTTACATGGAACATATTGTCAGCAGTTTTGGATGCCTCTACTTGCTCGACTAGTTGCTCAGATTGATGATGACGACGAGTTTATTATGATGCTGCAAAAACACATCTTGGAAGACCACTGGATAAAGGGACATGAACTTGTACTGCATGTTTTGTACCATCTGCACTCCCTGATGATATTCGATTCAGTTGAAAATGCTTCATCTTCTGCTGTTTTATATGAAAAATTTCTCTTGGGAGTGGCCAAAACTTTGTTGGACTCTTTTCCAGCTTCAGACAAGTCTTTTAGTAGACTTCTTGGTGAAGTTCCACTTTTGCCTGAATCGTCCTTGAAGATTTTGAATGATCTCTGCTATTCTGATGTTATTGGTCATGATGGAAAAGTTATCCGTGACATTGAACGTGTGACTCAAGGCCTTGGTGCTATCTGGAGTTTAATTTTGGGGCGTCCACAAAATCGCCAAGCCTGCTTGGGAATAGCATTGAAGTGTGCTGTCCACCCACAGGATGAGATTCGAGCTAAAGCTATTCGGCTGGTTACAAACAAGCTCTTTCAGCTTAGTTACATATCAGGAGATGTTGAAAAGTTTGCAACAAAGATGCTGCTTTCTGCTGTAGAACATGAGGTTTCAGATACGGGTCTTTTGCAACCTGGACCTGGACCTACTGGACATAGAGCCGAGGCAGAGGTTGAAGGCCATGAAGTAAGTACTTCTCAGGTTTCAGAGTCTACAATTTCTGAAGATGAATCTGCTAGAATGGCTAAACCATTGATTCAAAATGTTCCATCTATATCATTTTCTGAAGCTCAACGTCTCATTTCTTTGTTTTTTGCCTTATGTACTAAGAAACCCGGTCTTCTTCAGATTGTATTTAATGTGTACGGGCAAGCCCCCAAAATTGTTAAACAGGCTTTTCATCGCCACATTCCTATTGTTGTCAGGGCACTGGGGCAATCTTATTCTGAACTGCTCCGTATCATATCTGATCCACCTCAAGGAAGTGAAAATCTTCTGACACTGGTATTGCAAATATTGACTCAGGACACGTCGCCATCTTCTGAGTTAATATCTACTGTTAAACGCTTGTATGAAACGAAATTTAGAGATGTTACAATTCTTGTTCCATTATTGTCTTCGCTCTCCAAACAGGAGGTTTTACCAATATTCCCAAGGCTTGTTGATCTTCCATTGGAAAAGTTTCAAAGAGCACTTGCTCACATACTACAGGGTTCAGCTCACACAGGTCCAGCTTTAACTCCTGTAGAAGTGTTGGTTGCAATGCATGGAATTGTTCCGGAGAAGGATGGCCTTGCACTTAAGAAGATAACAGATGCTTGCTCGGCTTGTTTTGAGCAACGTACTGTGTTCACACAACAGGTTCTAGCAAAGGCATTGAACCAGATGGTTGATCAAACTCCTCTGCCTCTACTTTTTATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTGCACTGGTTGATTTTGTTATGGAGATACTCTCAAAACTTGTTACAAGACAGGTGTGGCGTATGCCTAAACTTTGGGTTGGTTTCTTAAAATGTGTATATCAGACACAGCCACGTTCTTTTCATGTTCTATTGCAGTTGCCACCTCAACAACTTGAAAGTGCACTCAACAGGCACGCTAATCTCAGAGGTCCCCTTGCTTCATATGCCAGTCAACCAACTATAAAATCAACACTTAGTAGATCAATTTTAGCAGTTCTTGGTCTTGCAAATGAAACTCATGTGCAGCAACATTTGTCAACTTCGTTGCACCCTTCTGACACAAGTTCATCAGTTCATGGAACAACACTTACGTGA 4023 0.4171 MAAPTRDQALSLLATANNHGDLAVKTSSLKQAKDLLLSIDHSLAADLFPYLLELQSSPESLVRKLLIQIIEEIGFRAVEHSPTLISVLLTFLRDSDVIVVKQSIVSGTNIFGSVFEELILQFQQNGKVERWLEDTWISMLKFKDAVFGIAVEPGSVGIKLLALKFLEMFVLLFASDISDSEKLATKGGRPAFNVLWLVGGHPHPVLDPVVLMSEGNRTLGILLNLLQSVGTLPGCLTITVVNCLAAIARKRPQHYDTILLALLEFDPNVQTAKGCHVASIQYSLRTAFLGFLRCTYSPILESRERLIRSLRAMNAGDAADQVLRQVDKMIKNGDRPTRDARVNKDEQPSIQLSVSGELSRKRPVPLDNEQMTNGHESISKRIRSGPDSQSTLPAKINDPGQDPNSVNGVSPNVPLLDSEMTAVEQMIAVIGALLAEGERGAESLEILISKIHPDLLADIVITNMKHLPKTPPPLSRIGNLPATRQLNSQVSQSHVIATSVSINSVQSVSGTGQAVLPSTTAAVIGTSSLPSDTSIFSNLPADSKRDPRRDPRRLDPRRVVVAPGGATVSVTDDNGAAKIEFDEPVSSIKPVSLPVIADDNTPSDLTVKIKNDDMISEGAADQVTPKTEVQERPGDIHQIAEADTSFGPSVSSTDLREEDPSSVNLSDDIEAIGTDSSSISEFDQFSLDVQVEPTLEDTCLELPQLPPYVELSKEQRSIVKNMAVRHIINSYKHLHGTYCQQFWMPLLARLVAQIDDDDEFIMMLQKHILEDHWIKGHELVLHVLYHLHSLMIFDSVENASSSAVLYEKFLLGVAKTLLDSFPASDKSFSRLLGEVPLLPESSLKILNDLCYSDVIGHDGKVIRDIERVTQGLGAIWSLILGRPQNRQACLGIALKCAVHPQDEIRAKAIRLVTNKLFQLSYISGDVEKFATKMLLSAVEHEVSDTGLLQPGPGPTGHRAEAEVEGHEVSTSQVSESTISEDESARMAKPLIQNVPSISFSEAQRLISLFFALCTKKPGLLQIVFNVYGQAPKIVKQAFHRHIPIVVRALGQSYSELLRIISDPPQGSENLLTLVLQILTQDTSPSSELISTVKRLYETKFRDVTILVPLLSSLSKQEVLPIFPRLVDLPLEKFQRALAHILQGSAHTGPALTPVEVLVAMHGIVPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPALVDFVMEILSKLVTRQVWRMPKLWVGFLKCVYQTQPRSFHVLLQLPPQQLESALNRHANLRGPLASYASQPTIKSTLSRSILAVLGLANETHVQQHLSTSLHPSDTSSSVHGTTLT* 1341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0976 1340 Pfam Symplekin tight junction protein C terminal 1102 1280 IPR022075 -
Vra5g0976 1340 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1316 - -
Vra5g0976 1340 MobiDBLite consensus disorder prediction 542 556 - -
Vra5g0976 1340 SUPERFAMILY ARM repeat 8 1235 IPR016024 -
Vra5g0976 1340 MobiDBLite consensus disorder prediction 639 662 - -
Vra5g0976 1340 Pfam Symplekin/PTA1 N-terminal 96 320 IPR032460 -
Vra5g0976 1340 MobiDBLite consensus disorder prediction 946 974 - -
Vra5g0976 1340 MobiDBLite consensus disorder prediction 383 406 - -
Vra5g0976 1340 MobiDBLite consensus disorder prediction 534 556 - -
Vra5g0976 1340 MobiDBLite consensus disorder prediction 1320 1340 - -
Vra5g0976 1340 MobiDBLite consensus disorder prediction 330 406 - -
Vra5g0976 1340 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN-RELATED 1 1316 - -
Vra5g0976 1340 MobiDBLite consensus disorder prediction 644 659 - -
Vra5g0976 1340 MobiDBLite consensus disorder prediction 330 345 - -
Vra5g0976 1340 Gene3D - 1 346 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0976 Vra-Chr5 16099242 16127377 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0976 K06100 - gmx:100789876 2194.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0976 5 16099242 16127377 Vra5g0976 5 16099242 16127377 ECH