Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0966 ATGGCCACCATCGAGATAGAACGCGAGCGGGCGGAGAGTCCGAAAGACGCAACAGGCGACGATGACGTTTCGCCGATAGAGGAGGTTCGGATGGTTGTGTCGAACGAAGACAATCCGAACGAGCCGGTCTGGACGTTCCGCATGTGGTTCCTGGGGATCATGGCGGTGGCGTTGCTCTCGTTCCTGAACACATTTTTCGGTTACCGTAGCCAGCCGCTGACGGTGACGATGATATCGGTTCAGGTGGCGACGCTTCCCATCGGACGCTTCATGGCGAAGGTTCTCCCGAGAAGGAAGGTTCGGATAAGAGGGAGAGAATTTTCACTGAATCCTGGCCCCTTCAACAGAAAGGAGCACGTGCTGATATCCATATTCGCGAATGCGGGTGCCGCTTTTGGAAACGGTTCTGCTTATGCTGTTGGCATTGTGGATATAATACGCGCGTTTTATGGGAGGAAGATTAGCTTATTGGCTAGTTGGCTCTTGGTCTCGACCACACAGGTGTTAGGGTATGGATGGGCGGGGATAATGAAGAAGTACGTGGTGGAGCCCGCCCAGATGTGGTGGCCCGGTACTCTGGTCCAAGTCTCTCTCTTCAGAGCTTTGCATGAGAAAGAAGGGAAGCGAATGTCAAAAGAGAAATTTTTTATCATCGCACTTACCTGCAGCTTCGCGTGGTACGTGGTCCCTGGCTACCTATTTCCGACGTTGTCGATAATTTCGTGGGTGTGCTGGATATTTCCACACTCAGTTACTGCTCATCAACTTGGGTCCGGCAAGAATGGACTTGGTTTGGGTTCTTTTTCTCTTGACTGGACCACCATTGCTTCATTCCTTGGCAATCCCCTTGTCACTCCTTTCTTTGCAATAGCAAACGTCTTAGCGGGTTACGTTTTATTCATCTATCTCATCATACCCATTGCATATTGGGGACTTCATCTTTACAGTGCCAACAACTTTCCCATATACTCTTCTAATCTATTCACTTCCCATGGAGACGATTATAATGTTACGGCCATTGTCAATCAAAAGTTTGAGATAGACATGCAAGCATACGAGAAACAAGGTCTAGTCAACTTGAGTGTCTTCTTTGCTATTAGTTATGGCTTTGGTTTTGCTGCCATTGCCGCATCCCTCACTCATGTTGCCATATTTAACGGAAGGGAGATATATGAACAATTCCGATCTTCACAATCTGGAAAGGAAGACATCCACACAAGACTGATGAAGAAATACAAGCCAATACCTAATTGGTGGTTTCATGTGACGCTTTTAGTTTCCTTTCTACTTGCACTTTTACTGTGTACTGTCATGAAAGATCAGGTACAAATGCCATGGTGGGGTCTCATCTTTGCAGCTGGCCTTGCACTTACTTTTACTCTCCCCATTAGCATCATAACGGCCACCACGAATCAGAGTCCAGGATTGAATATCATTACTGAATACATCATGGGTGTGATCTTACCGGGAGAACCAATAGCAAACGTTTGTTTTAAGACATATGGGTACATAAGTATGTCACAGGCTGTTTCCTTTCTATCTGATTTCAAACTAGGACATTATATGAAGATTCCGCCTCGGTCCATGTTCATCGTTCAGGTTATAGGGACTCTGATAGCAGGAACCGTGGATGTTGGTGTGGCCTGGTGGTTGCTAGGTTCAATAAAGAATATATGCAAACAAGATTTACTGCCCGAAAACAGTCCATGGACGTGCCCTGGTGATCATGTTTTCTTTGATGCATCTGTGATCTGGGGTTTGGTTGGTCCAAGGAGGATTTTCGGTAGTCTAGGGAAATACCAAAAGCTGAATTGGTTCTTCTTAATAGGAGCAGTGGGACCAGTTGGTATATGGGCACTCCAGAAAGTGTTTCCAAAACAACATTGGATATCCTTAATTCACCTTCCTGTACTTCTTGGAGCAACTGCAAGCATGCCACCGGCTAGCACAGTGAACTTCAATTCATGGATTGTTGTTGGCACAATCTTTAATTATTTTGTGTTCAAATATAGGAAGAATTGGTGGAAGCGGTATAATTATGTGCTAGCTGCAGCTTTGGACGCCGGATTGGCTTTCATGACTGTTCTTATATACTTTGCACTTTTGATGGAAGGTAAAGGCATTCAATGGTGGGGAACTGATGAGCACTGTCCACTGGCTGAATGTCCAACAGCAAAAGGTCTAATTGCTGAAGGCTGTCCTGTCTTCTGA 2211 0.4586 MATIEIERERAESPKDATGDDDVSPIEEVRMVVSNEDNPNEPVWTFRMWFLGIMAVALLSFLNTFFGYRSQPLTVTMISVQVATLPIGRFMAKVLPRRKVRIRGREFSLNPGPFNRKEHVLISIFANAGAAFGNGSAYAVGIVDIIRAFYGRKISLLASWLLVSTTQVLGYGWAGIMKKYVVEPAQMWWPGTLVQVSLFRALHEKEGKRMSKEKFFIIALTCSFAWYVVPGYLFPTLSIISWVCWIFPHSVTAHQLGSGKNGLGLGSFSLDWTTIASFLGNPLVTPFFAIANVLAGYVLFIYLIIPIAYWGLHLYSANNFPIYSSNLFTSHGDDYNVTAIVNQKFEIDMQAYEKQGLVNLSVFFAISYGFGFAAIAASLTHVAIFNGREIYEQFRSSQSGKEDIHTRLMKKYKPIPNWWFHVTLLVSFLLALLLCTVMKDQVQMPWWGLIFAAGLALTFTLPISIITATTNQSPGLNIITEYIMGVILPGEPIANVCFKTYGYISMSQAVSFLSDFKLGHYMKIPPRSMFIVQVIGTLIAGTVDVGVAWWLLGSIKNICKQDLLPENSPWTCPGDHVFFDASVIWGLVGPRRIFGSLGKYQKLNWFFLIGAVGPVGIWALQKVFPKQHWISLIHLPVLLGATASMPPASTVNFNSWIVVGTIFNYFVFKYRKNWWKRYNYVLAAALDAGLAFMTVLIYFALLMEGKGIQWWGTDEHCPLAECPTAKGLIAEGCPVF* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0966 736 PANTHER OLIGOPEPTIDE TRANSPORTER 2 14 735 - -
Vra5g0966 736 TIGRFAM ISP4_OPT: small oligopeptide transporter, OPT family 22 702 IPR004648 GO:0055085
Vra5g0966 736 MobiDBLite consensus disorder prediction 1 22 - -
Vra5g0966 736 PANTHER ISP4 LIKE PROTEIN 14 735 IPR004648 GO:0055085
Vra5g0966 736 Pfam OPT oligopeptide transporter protein 44 700 IPR004813 GO:0035673
Vra5g0966 736 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 27 701 IPR004813 GO:0035673
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0966 Vra-Chr5 15979148 15984343 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0966 1 736 Organic Solute Cotransporters AT1G09930 69.648 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0966 - - gmx:100785973 1248.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0966 5 15979148 15984343 Vra5g0966 5 15979148 15984343 ECH