Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0957 ATGCGTGTCACCGAGGATCTAGGGTTTTCGAGCCTGGTCCTTTTGGTGGTTTGTCTGGCGGTGCCGGTGATCGGCCTTGTAATTAGCCGTAGATGGCAGGTTTCCGAAGCTAAGAAGGAGGAGATCAGGAGACTTTTGGTTTTGGCAGCAGAGGAAACTGCCAGGGCCGAGAAAGAAGCATACGGCACGGTTACTGCTGCTCCAAGCAATCAATGCGCCGTGTGCTATTTTCCCGCCACCGCGCGCTGCGCTCAGTGCAAATCAGTTCGCTACTGTTCTTTTGAGTGCCAAACTGTTCATTGGCGGCAAGGTCACAAGTTAGAATGCAGTCCTTCCAACATAAACCACCGGAGTTATGATATAAAAAGTGATCTTGGCAGCAAGGTGGTAGAACAAGGCTACTCTGGAATATATGGTGAGAAGTCAGAAAGTGAAAGAACAGAATGTAAATCATCCTTTGAAAAGCCTTCAATTTCTGATAGCTGCTTTTCTCCAAAAGTTTCATCTCAGAAGGATGAAAACTTCAGATTTGAGTCTCTTGCAGAGGGGAATATAACAGATTCTAATTCGGAATTGTCCAGTAATTCATTTTCTGGATTCTCAGCTTCCACAGGTTCCAGTGATTCATCTGATGATTCCTCTGTCTGTGAGAGTGTCGTTTCTAATGAGCATGTCAGATCGGAGGGAGATATTTTGGTTGATTCCACCCCTGACATTCGTGACAAAACTAATGACAATAGCAATGGGGCAACCATGTCTTCTTCACCTAAGTTTGCTGCTTTGGTTGATTCAGTAGATGGTTTTTCTACAATGCATGAATTAAATCATATCGGACCTGGTTTTAGTAAAGAAGAGAGTAAGTTTGCATCAGATGGTAATTCAGGTTCAAATGTGTATAAGGAGAAAACAATTGATCCTTCTGCAGTGTTTTCTGGATTCTGGGATAAAGCACTTGATGGGATTAAAGATGATTCTAAGAATGACACTCATACATCTTATTCTGATGAATCAACGGTTAAAAGGACTGTTTCTGAATCTTCATTTCACTTTTCATTCAGTACCATACCTCCTGCACATGTAGGAGATACCAAGATGAAGGGTTCTGAATCTGATAATGCATTTCCAAATTGTATTGGGTCTGAGAATGACAACATGAACTCTTCAAAGGAGAGGAATTTCTCGTTCTCCAATGGCAATGTTTCCAATATTAGGAGTTATGTTACTCTAAGTGATTTTGAATCTGATCATTTGGAATCTAAAGCCAGCTCCAGACCACCTTTATCATCTTTCTCCCATCAATCCTCCTGTGTAGGCAAAGGTTCAGTTTGCGCAGATGCTTTGAACATCCATAATTTGCAAGCAACTGACACTAAGGTAACAAATCATGTTGTGGAAAACTGCCACAGCACCTTCAAGTCCACTGCGATTGGATGCCTGAAGCATGACCATACTGATTCTAATTTAGCTTCTGAAACTAAAGAAAATTCTTATGCCAGTACAAAACACAGGAATAATGACGATGAATATGACACCTGGACTGTCACTTCCTCTCGTGTTGCTAGCTGTTCTGCAAATTCTGGAAGTGGTATAAAAACTTCTGTTTTGAAAGTTATTGATCAGTTTAGAGAATCAAATATGTCAAAGCACTTTCCGTTCTCTGTTGGGAGTGAGGTTGGTGAAAGACACAATGACAAGGTTTTTTTTCCTTATGAAATGTTTGTCAAGCTTTATAACTCAAACAAGGTGGAGTTATGCCCATTTGGCCTTATAAATTGTGGAAACAGTTGTTATGCTAATGCTATACTTCAGTGCTTAGCATTTACGCCGCCTCTGACTGCTTATTTGTTTCAAGGATTACATTCTAAATCATGTGCACCTAAAAAATGGTGTTTCACCTGTGAATTTGAAAGATTGATTTTGAAGTCAAAGGACACAAAATCTCCATTGTCTCCTATGAGCATAATCTCTCATTTACAGAATATTGGAAGTCAGCTTAGTAATGGGAGAGAAGAAGATGCACATGAATTTCTTAGGCATGTTATTGACACAATGCAATCTGTTTGCCTTCTGGAAGCTGGGGTTACTGCATCGGGCTCTTTAGAAGAGGACACTACTTTAATGGGTCTAACATTTGGTGGTTACCTTCGATCAAAGATAAAATGCATGAAATGTGGAGGGAAGTCTGAGCGTCAAGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGGGATATAACAACCCTGGTGGAGGCTCTTCAACGATTTACAAGCACTGAGACTCTGGATGGGGAAAACAAGTACCACTGTGTCAGATGTAAATCTTATGAGAAGGCCAAGAAGAAGTTGACAGTTTCAGAGGCACCCAATGTTCTTACTGTTGCATTAAAGAGATTTCAGTCTGGGAAATTTGGGAAGCTCAACAAGCCTATTCAATTTCCTGAAATACTTAATTTGGCGCCTTTCATGAGTGGGACTAGTGATAAATCACCCATATACAGATTGTATGGGGTAGTTGTCCACTTAGATAACATGAATGCTGCCTTTTCGGGTCATTATGTGTGCTATGTGAAGAATATACAAAACAGGTGGTTCAAGGTTGATGACAGTGTGGTGACTGCTGTTGAATTGGAGAGAGTCTTGACAGTAGGAGCATATATGCTTTTATATGCAAGGTGCTCGCCTAGGGCTCCAAGATTAATCAGGAACAGAATACTATCCTCGGATTCAAAATGTAAAGCCAGCGGAAAGACTCTTGCAACGAAAGCGAGATATATATCTACGAATTATGGTGTTCCTGAACATGTAAACAGTTCCATCTCTCCGGATGGCTCACCTGCATTGGAGTCTTTCTATTCAAAGTTTCACCACCTGAAAAAGATTTTAGAGGAAGACTCGTCCAGTGATAATTCATCCCTCTTTAGCAGCAATTCTGATGAAGGTTCTTGCAGTACCGATAGCACCTGCGATTCAGCCAGTACAGATGACTTCACAGATTATCTTTTTGGTGATTCGGGAAATGGGTGGAGGAATTCTGATTCTGACACGTCCTCTTCATCTTCCCCCTTAAACTGTCGACATTCCCCACTCTCTAATATGGATCGATACGATTCAGTTTCTCCTGGTGTGGAGAAAGACAATGATGTATACAGAAATGGAGCAGTGAATGTTGAAAGGAGAGGGATGGGTGTTTTGCATTCTAACACAACTTCACAGCATAGAGGGTTAGGTAGTGGTAGGATTAGTAGTAGGGAGACTGACTGTTTTGTGAAAGAAGGATCTAACCTTTGTAATAATGATACAGAATGTGGTGTATTACGTAGAAAAAGCATAGAACGGATTAAAATTTAG 3348 0.4089 MRVTEDLGFSSLVLLVVCLAVPVIGLVISRRWQVSEAKKEEIRRLLVLAAEETARAEKEAYGTVTAAPSNQCAVCYFPATARCAQCKSVRYCSFECQTVHWRQGHKLECSPSNINHRSYDIKSDLGSKVVEQGYSGIYGEKSESERTECKSSFEKPSISDSCFSPKVSSQKDENFRFESLAEGNITDSNSELSSNSFSGFSASTGSSDSSDDSSVCESVVSNEHVRSEGDILVDSTPDIRDKTNDNSNGATMSSSPKFAALVDSVDGFSTMHELNHIGPGFSKEESKFASDGNSGSNVYKEKTIDPSAVFSGFWDKALDGIKDDSKNDTHTSYSDESTVKRTVSESSFHFSFSTIPPAHVGDTKMKGSESDNAFPNCIGSENDNMNSSKERNFSFSNGNVSNIRSYVTLSDFESDHLESKASSRPPLSSFSHQSSCVGKGSVCADALNIHNLQATDTKVTNHVVENCHSTFKSTAIGCLKHDHTDSNLASETKENSYASTKHRNNDDEYDTWTVTSSRVASCSANSGSGIKTSVLKVIDQFRESNMSKHFPFSVGSEVGERHNDKVFFPYEMFVKLYNSNKVELCPFGLINCGNSCYANAILQCLAFTPPLTAYLFQGLHSKSCAPKKWCFTCEFERLILKSKDTKSPLSPMSIISHLQNIGSQLSNGREEDAHEFLRHVIDTMQSVCLLEAGVTASGSLEEDTTLMGLTFGGYLRSKIKCMKCGGKSERQERMMDLTVEIEGDITTLVEALQRFTSTETLDGENKYHCVRCKSYEKAKKKLTVSEAPNVLTVALKRFQSGKFGKLNKPIQFPEILNLAPFMSGTSDKSPIYRLYGVVVHLDNMNAAFSGHYVCYVKNIQNRWFKVDDSVVTAVELERVLTVGAYMLLYARCSPRAPRLIRNRILSSDSKCKASGKTLATKARYISTNYGVPEHVNSSISPDGSPALESFYSKFHHLKKILEEDSSSDNSSLFSSNSDEGSCSTDSTCDSASTDDFTDYLFGDSGNGWRNSDSDTSSSSSPLNCRHSPLSNMDRYDSVSPGVEKDNDVYRNGAVNVERRGMGVLHSNTTSQHRGLGSGRISSRETDCFVKEGSNLCNNDTECGVLRRKSIERIKI* 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0957 1115 MobiDBLite consensus disorder prediction 966 990 - -
Vra5g0957 1115 MobiDBLite consensus disorder prediction 1010 1046 - -
Vra5g0957 1115 ProSiteProfiles Zinc finger MYND-type profile. 72 109 IPR002893 -
Vra5g0957 1115 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 587 892 IPR028889 -
Vra5g0957 1115 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 21 1092 - -
Vra5g0957 1115 MobiDBLite consensus disorder prediction 199 221 - -
Vra5g0957 1115 MobiDBLite consensus disorder prediction 1010 1034 - -
Vra5g0957 1115 MobiDBLite consensus disorder prediction 199 255 - -
Vra5g0957 1115 Gene3D Cysteine proteinases 580 901 - -
Vra5g0957 1115 SUPERFAMILY HIT/MYND zinc finger-like 68 111 - -
Vra5g0957 1115 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 21 1092 - -
Vra5g0957 1115 Coils Coil 39 59 - -
Vra5g0957 1115 ProSitePatterns Zinc finger MYND-type signature. 72 109 IPR002893 -
Vra5g0957 1115 SUPERFAMILY Cysteine proteinases 583 894 IPR038765 -
Vra5g0957 1115 Pfam Ubiquitin carboxyl-terminal hydrolase 587 889 IPR001394 GO:0004843|GO:0016579
Vra5g0957 1115 Pfam MYND finger 72 109 IPR002893 -
Vra5g0957 1115 MobiDBLite consensus disorder prediction 223 241 - -
Vra5g0957 1115 Gene3D - 61 114 - -
Vra5g0957 1115 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 588 603 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0957 Vra-Chr5 15873382 15881956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0957 565 896 Miscellaneous Gene Families AT4G31670 51.652 1.31e-118 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0957 K11855 - gmx:100795674 1536.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0957 5 15873382 15881956 Vra5g0957 5 15873382 15881956 ECH