Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0956 ATGGATGCTAAGTTGGGCATTGGGCTATTTTTGTGTGTAGTTTGGGTGATGAGCGGCAATGCCACTGACCCTTGTGGCTCTCAGCCGGATGAGTCGGACCTCAACGTGATTCCCGTCTACAGCAAATGCTCACCGTTCAAGCCACCCAAGGCAGACTCGTGGGACACCAGGATCGTGGACATGGCCTCAAAAGACCCTCTCCGTGTCAGGTACCTGTCCACCTTATTGGGCCAGAAGACCGTCTCCGCCGCCCCAATAGCTTCCGGTCAGGCCTTCAACATCGGTAACTACATCGTCAGGGCAAAACTCGGAACCCCCGGTCAACTTTTGTTCATGGTTTTGGACACCAGCACCGACGAGGCCTTCGTCCCTTGCTCCGGCTGCACGGGCTGCTCCGACACCACGTTCTCCCCCAAAGCTTCCACAAGCTACGGCCCATTGGACTGCTCCGTACCCCAGTGCGGTCAGGTCCGCGGGCTTTCATGCCCCGCCACAGGAACCGGCGCCTGCTCCTTTAACCAAACCTACGCCGGCTCCTCTTTCTCCGCCACACTCGTCCAAGACTCTCTCAGATTAGCCGCTGATGTTATCCCTAACTACTCCTTCGGCTGCGTCAACGCCATCTCCGGGGCCTCAGTTCCGGCCCAAGGACTTTTGGGTCTGGGCCGCGGGCCACTGTCGCTTCTCTCCCAGTCCGGGACAAACTACTCCGGTGTATTCTCTTACTGCCTTCCTAGCTTCAAATCGTACTACTTCTCCGGGTCGCTCAAACTCGGGCCCGTGGGCCAGCCCAAGAGCATCCGGACCACCCCGCTTCTGCGCAACCCCCACCGGCCTTCTCTTTACTACGTGAACTTCACCGGAATCAGCGTGGGGCGCGTCCTGGTGTCTTTCCCCAGCGAGTATCTTGAGTTTAACCCGTATACCGGATCCGGAACCATAATTGATTCGGGAACGGTGATCACCCGGTTCGTGGAGCCCGTGTACAACGCGGTGAGGGAGGAGTTCAGGAAGCAGGTGGGAGGCACGTTCTCGAGCATTGGAGCTTTCGACACGTGTTTTGTGAAGACGTATGAAAATCTGGCACCGCCAATTACCCTTCACTTTGAGGGATTGGACCTGAAGCTGCCATTGGAGAACAGCTTGATTCACAGCAGTGCCGGGTCGCTGGCTTGCCTTGCTATGGCGGCGGCGCCGGATAACGTGAACTCGGTGTTGAACGTGATTGCGAACTTTCAGCAACAGAATCTTAGGATTTTGTTTGATACCGTGAATAATAAGGTTGGCATAGCCCGTGAGGTTTGTAACTAA 1311 0.5637 MDAKLGIGLFLCVVWVMSGNATDPCGSQPDESDLNVIPVYSKCSPFKPPKADSWDTRIVDMASKDPLRVRYLSTLLGQKTVSAAPIASGQAFNIGNYIVRAKLGTPGQLLFMVLDTSTDEAFVPCSGCTGCSDTTFSPKASTSYGPLDCSVPQCGQVRGLSCPATGTGACSFNQTYAGSSFSATLVQDSLRLAADVIPNYSFGCVNAISGASVPAQGLLGLGRGPLSLLSQSGTNYSGVFSYCLPSFKSYYFSGSLKLGPVGQPKSIRTTPLLRNPHRPSLYYVNFTGISVGRVLVSFPSEYLEFNPYTGSGTIIDSGTVITRFVEPVYNAVREEFRKQVGGTFSSIGAFDTCFVKTYENLAPPITLHFEGLDLKLPLENSLIHSSAGSLACLAMAAAPDNVNSVLNVIANFQQQNLRILFDTVNNKVGIAREVCN* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0956 436 Gene3D Acid Proteases 260 436 IPR021109 -
Vra5g0956 436 Pfam Xylanase inhibitor C-terminal 282 431 IPR032799 -
Vra5g0956 436 Pfam Xylanase inhibitor N-terminal 97 259 IPR032861 -
Vra5g0956 436 ProSiteProfiles Peptidase family A1 domain profile. 97 431 IPR033121 -
Vra5g0956 436 PANTHER ASPARTYL PROTEASE-RELATED 9 436 IPR001461 GO:0004190|GO:0006508
Vra5g0956 436 SUPERFAMILY Acid proteases 90 435 IPR021109 -
Vra5g0956 436 PANTHER ASPARTYL PROTEASE AED3 9 436 - -
Vra5g0956 436 Gene3D Acid Proteases 76 259 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0956 Vra-Chr5 15863579 15865239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0956 87 436 Miscellaneous Gene Families AT1G77480 26.854 4.21e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0956 - - gmx:100816307 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0956 5 15863579 15865239 Vra5g0956 5 15863579 15865239 ECH