Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0953 ATGACTGTAAAAGGGTTTTTTGAAGGTGGCGTTGCTTCCATCGTTGCAGGTTGCTCCACCCACCCACTCGACCTCATCAAAGTTCGCATGCAGCTTCAAGAAACGCACAACCTCCGCCCCGCGTTTGCGTTTCACGCGTCCACTCCAATGCCGCCTCCGCCTCCTTCCGGTCCTATATCAGTCGGCGTCCGAATCGTCCAGTCGGAGGGCGTCGCCGCGCTCTTTTCCGGCGTTTCCGCCACAATGCTCCGTCAGACGCTGTACTCCACCACCCGTATGGGCCTCTACGACGTGCTCAAGCGCCATTGGACCGACCCCGAGCAGGGCACCATGCCCCTCTCGCGAAAGATAACGGCGGGCCTGATCGCCGGAGGGATCGGCGCAGCCGTGGGGAACCCCGCCGACGTGGCCATGGTGCGAATGCAGGCAGATGGGCGGGCTCCGGCGGCTGAGCGGCGCAACTACAAGGGTGTGTTCGACGCGATACGGCGCATGAGCAACCAGGAGGGGGTTGGCAGCCTGTGGCGTGGCTCAGCGCTCACAGTGAACCGCGCGATGATCGTGACGGCGTCTCAGTTGGCGTCGTACGACCAGTTTAAGGAAACTATCCTCGGACACGGGTGGATGGAGGATGGGCTAGGGACCCACGTAGCTGCGAGTTTTGCGGCGGGTTTTGTGGCTTCTGTTGCGTCGAATCCTATTGATGTTATAAAGACAAGGGTGATGAACATGAAGGTTGAGGCTTACAATGGGGCCTTCGATTGTGCTATGAAGACTGTTAGGGCTGAAGGACCTCTTGCCCTTTATAAGGGTTTCATCCCTACAATCTCAAGGCAGGGTCCTTTTACCGTCGTGCTCTTTGTCACCCTCGAACAAGTCAGGAAGCTGCTCAAGGAGTTTTGA 903 0.5836 MTVKGFFEGGVASIVAGCSTHPLDLIKVRMQLQETHNLRPAFAFHASTPMPPPPPSGPISVGVRIVQSEGVAALFSGVSATMLRQTLYSTTRMGLYDVLKRHWTDPEQGTMPLSRKITAGLIAGGIGAAVGNPADVAMVRMQADGRAPAAERRNYKGVFDAIRRMSNQEGVGSLWRGSALTVNRAMIVTASQLASYDQFKETILGHGWMEDGLGTHVAASFAAGFVASVASNPIDVIKTRVMNMKVEAYNGAFDCAMKTVRAEGPLALYKGFIPTISRQGPFTVVLFVTLEQVRKLLKEF* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0953 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 111 202 IPR018108 -
Vra5g0953 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 102 IPR018108 -
Vra5g0953 300 Gene3D Mitochondrial carrier domain 3 299 IPR023395 -
Vra5g0953 300 PRINTS Mitochondrial brown fat uncoupling protein signature 96 108 IPR002030 GO:0006839|GO:0031966
Vra5g0953 300 PRINTS Mitochondrial brown fat uncoupling protein signature 165 182 IPR002030 GO:0006839|GO:0031966
Vra5g0953 300 PRINTS Mitochondrial brown fat uncoupling protein signature 208 226 IPR002030 GO:0006839|GO:0031966
Vra5g0953 300 PRINTS Mitochondrial brown fat uncoupling protein signature 285 300 IPR002030 GO:0006839|GO:0031966
Vra5g0953 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 296 IPR018108 -
Vra5g0953 300 SUPERFAMILY Mitochondrial carrier 3 293 IPR023395 -
Vra5g0953 300 Pfam Mitochondrial carrier protein 213 298 IPR018108 -
Vra5g0953 300 Pfam Mitochondrial carrier protein 3 104 IPR018108 -
Vra5g0953 300 Pfam Mitochondrial carrier protein 111 204 IPR018108 -
Vra5g0953 300 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 1 300 - -
Vra5g0953 300 PANTHER MITOCHONDRIAL UNCOUPLING PROTEIN 5-LIKE 1 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0953 Vra-Chr5 15846180 15847476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0953 1 299 Miscellaneous Gene Families AT5G09470 59.281 4.71e-121 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0953 K15104 - gmx:100790234 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0953 5 15846180 15847476 Vra5g0953 5 15846180 15847476 ECH