LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra5g0950	ATGGCATCATCAGTCTCAGGCATTTACACCTCTTCCCCCTCTCTCAAACGATTCCCAAACCAAACCCCGCCGTTGACCCAACCTCTCCGCAAAGATCACGTCTCCTTCCACGCGCGCCGCGCCGATCGCTCCCTAAGCCTCGCCAGGCCGCGGGCAGTGGCTCGGGAGGTTTCGGACGGAGCGGCGGCGGCGGCGGCGGCGGCGGCGAAGGGGTTGGAGAAAGATCCGCGTGCGCTATGGCGGAGGTACGTGGATTGGCTGTACCAGCATAAAGAACTGGGTCTTTACTTGGACGTGAGTCGGGTCGGGTTCACGGACGAGTTCGTAAGGGAAATGGAGCCCCATTTTGGAAAGGCGTTTGAGGCGATGGAAGAGTTGGAGAAGGGTGCGATCGCGAATCCTGATGAGGGACGCATGGTGGGGCACTATTGGTTGAGGGACCCTAAGCGCGCGCCCAACTCATTCCTGAAGACGCAGATTGAGAATACTCTCGATGCTGTTTCCAAGTTCGCTAACGACGTCGTTAGTGGTAAGATTAAACCTCCTTCGTCGCCGGAGGGTCGATTTACTCAAATACTGTCTGTCGGAATTGGAGGTTCTGCTCTTGGACCACAGTTTGTTGCAGAGGCACTGGCTCCTGATAATCCTCCACTTAAGATAAGATTTGTTGACAACACGGATCCTGCTGGAATTGATCATCAGATTGCGCAGCTTGGGCCAGAGCTAGCCTCAACACTTGTGATTGTGATTTCAAAGAGTGGAGGTACCCCAGAGACTAGAAATGGTTTGTTGGAAGTTCAGAAGGCCTTTCGTGAAGCAGGCTTGAATTTTCCGAAACAGGGTGTTGCTATAACACAAGAAAATTCTTTGTTGGATAACACTGCCAGAATTGAAGGCTGGTTAGCTAGATTTCCTATGTTTGATTGGGTGGGAGGCAGAACGTCAGAGATGTCTGCAGTTGGCCTGCTTCCAGCAGCTCTTCAGGGCATTGATATCAGAGAAATGCTTGCTGGTGCATCATTGATGGATGAAGCAAATAGAAGCACTGTGTTAAGGAATAACCCTGCAGCTCTGCTGGCTTTATGTTGGTATTGGGCTACAGACGGTGTAGGATCTAAGGATATGGTTATTCTTCCATACAAGGATAGTCTGTTATTATTCAGTAGATACTTGCAGCAGCTGGTCATGGAATCTCTAGGCAAGGAGTTTGACTTGGATGGTAATAGGGTTAATCAAGGAATTAGTGTTTATGGAAATAAAGGAAGCACGGATCAACACGCCTACATCCAACAATTGAGGGAGGGTGTACACAACTTCTTTGTTACATTCATTGAGGTGCTACGTGATAGACCTCCTGGTCATGACTGGGAACTTGAACCTGGTGTCACTTGTGGTGACTACTTGTTTGGTATGCTACAGGGAACAAGGTCAGCTCTGTATGCTAATGACAGAGAATCCATCACAGTTTCTGTACAAGAAGTGACACCAAGAACAGTCGGTGCTCTTATTGCACTCTATGAACGAGCAGTTGGAATTTATGCATCCCTTATCAACATAAATGCTTATCATCAACCTGGTGTGGAGGCTGGTAAAAAGGCAGCTGGTGAAGTACTGGCACTTCAGAAGCGAGTGTTAGCAGTGCTAAATGAGGCAAGCTGCAAAGATCCCATTGAACCATTGACACTAGAAGAAGTAGCTGACCGTTGCCATGCTCCTGAAGATATTGAAATGATTTACAAGATTATTGCGCACATGGCCGCCAATGACAGAGCACTAATTGCTGAAGGCAGCTGTGGATCACCTCGTAGCATCAAGGTTTTTCTTGGGGAATGTAACATTGGTGAATCTTATGCTTGA	1857	0.4857	MASSVSGIYTSSPSLKRFPNQTPPLTQPLRKDHVSFHARRADRSLSLARPRAVAREVSDGAAAAAAAAAKGLEKDPRALWRRYVDWLYQHKELGLYLDVSRVGFTDEFVREMEPHFGKAFEAMEELEKGAIANPDEGRMVGHYWLRDPKRAPNSFLKTQIENTLDAVSKFANDVVSGKIKPPSSPEGRFTQILSVGIGGSALGPQFVAEALAPDNPPLKIRFVDNTDPAGIDHQIAQLGPELASTLVIVISKSGGTPETRNGLLEVQKAFREAGLNFPKQGVAITQENSLLDNTARIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDIREMLAGASLMDEANRSTVLRNNPAALLALCWYWATDGVGSKDMVILPYKDSLLLFSRYLQQLVMESLGKEFDLDGNRVNQGISVYGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYANDRESITVSVQEVTPRTVGALIALYERAVGIYASLININAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASCKDPIEPLTLEEVADRCHAPEDIEMIYKIIAHMAANDRALIAEGSCGSPRSIKVFLGECNIGESYA*	619

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra5g0950	618	Pfam	Phosphoglucose isomerase	480	539	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g0950	618	Pfam	Phosphoglucose isomerase	122	448	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g0950	618	Hamap	Glucose-6-phosphate isomerase [pgi].	92	541	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g0950	618	PRINTS	Glucose-6-phosphate isomerase signature	192	211	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g0950	618	PRINTS	Glucose-6-phosphate isomerase signature	304	322	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g0950	618	PRINTS	Glucose-6-phosphate isomerase signature	380	401	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g0950	618	PRINTS	Glucose-6-phosphate isomerase signature	482	500	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g0950	618	PRINTS	Glucose-6-phosphate isomerase signature	500	514	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g0950	618	PRINTS	Glucose-6-phosphate isomerase signature	514	527	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g0950	618	MobiDBLite	consensus disorder prediction	1	28	-	-
	Vra5g0950	618	PANTHER	GLUCOSE-6-PHOSPHATE ISOMERASE	3	618	-	-
	Vra5g0950	618	CDD	SIS_PGI_1	161	327	IPR035476	-
	Vra5g0950	618	SUPERFAMILY	SIS domain	79	541	IPR046348	GO:0097367\|GO:1901135
	Vra5g0950	618	ProSitePatterns	Phosphoglucose isomerase signature 2.	514	531	IPR018189	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g0950	618	Gene3D	-	142	327	-	-
	Vra5g0950	618	ProSiteProfiles	Glucose-6-phosphate isomerase family profile.	12	547	IPR001672	GO:0004347\|GO:0006094\|GO:0006096
	Vra5g0950	618	CDD	SIS_PGI_2	373	537	IPR035482	-
	Vra5g0950	618	Gene3D	-	328	523	-	-
	Vra5g0950	618	PANTHER	GLUCOSE-6-PHOSPHATE ISOMERASE	3	618	IPR001672	GO:0004347\|GO:0006094\|GO:0006096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra5g0950	Vra-Chr5	15823766	15828453	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra5g0950	K01810		-	gmx:100791285	1139.41

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vra5g0950	5	15823766	15828453	Vra5g0950	5	15823766	15828453	ECH