Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0949 ATGCGACGAACTTGTGAGGTAGAATCTTCAAACTTCATCAAATTATCAGCAATTTACCGTAGCAAGCACATCTCTTCTGAATCCTCATCGCTCCCATGGATATCTCCGCTCAAATTCACCAAACCCGCAAAACCCAAACCGGATCCTCCGCCGGAAACCGCCGCGGAACCTCCGAGGAAGCGGAAGTTCATTTCTCACGACGGCGCCATCGATTTGATAAGACGCGAGAAGGACCCGCAGCACGCCTTGAAGATATTCAACATGGTTTCACAACAGAAGGGGTTTCACCACAACAATGCCACCTACGCCATCATTCTCGAAAAGCTCGCTCGCTGCAACAAGTTCCACACTGTGGATCAAGTCATTCACCAAATGACCTACGAAACCTGCAAATTCCACGAGGGTATATTCGTCAACCTCATGAACTATTTCTCCAAATCCTCCCTTCACGAAAAAGTGCTCCAAGCTTTTTTCTCCATTCAACCAATCGTGAGGGACAAACCCTCCCCCAAAGCCCTCACCACTTGCCTCAACCTTTTGCTCGAATCGAACCGCGTCGATTTGGCGCGACAATTGCTCTTGCATGCCAAACGCGGTCTAACGCACAAGCCAAACGTTTGCGTATTCAATATCCTTGTGAAGTATCACTGCAAGAATGGAGACCTGGAATCTGCTTTTGAAGTTGTAAAGGAAATGAGAAACTGTGAGTTTTCTTACCCTAACTTAGTTACCTACTCCACCCTTATGGATGGACTTTGTCGAAATGGAAGACTCAGAGAAGCCTTTCAATTGTTTGAGGAAATGGTTTCGAGGGATCACATTGTGCCTGATCCTCTTACTTACAATGTTTTGATCAATGGATTTTGCCGTGAAGGGAAACCTGACCACGCTAGAAATGTGATTGAGTTTATGAAGAGTAATGGATGTTATCCGAATGTGTATAATTACTCAGCATTGGTGAACGGTTTGTGTAAAATTGGGAAATTGGAAGACGCAAAAGGGCTTTTGGCTGAGATGAAGAATGCTGGTTTGACACCGGATGCAGTTATATACACTAGTTTGATCAATTACTTGTGTACGAATGGACAAGTTGGTGAAGGTATTCAGTTGCTTGAAGAAATGAAGGAGAATAAGATTCAAGCTGACACTGTTACGTTCAATGTGATACTTGGGGGGTTGTGTAGAGAAGGTAGATTTGAGGAGGCTCTAGATATGCTTGGGAAACTCCCTCAGCAGGGTGTGTATTTGAACAAAGGTAGCTACAGAATTGTTCTGAATTCCTTGACCCGAAAAGGTGAGTTGAAAAGGGCAAAGGAGTTACTGGGGTTAATGCAAAGTAGGGGTTTTCTGCCCCATTATGCCACTTCAAATGAATTGTTGGTTTGTCTTTGTAAGGGGGGGATGGCCGATGATGCTGCCAGGGCACTATTTGATTTGGTGGAGATGGGTTTTCAGCCAGGACTTGAGACATGGGAAGTTTTAATTGGGTTAATCTGCAGAGACAGGAAGTTGTTGTATGTTTTTGAGCTGCTTGATGAATTACTGGTCACAGATACATGA 1560 0.4449 MRRTCEVESSNFIKLSAIYRSKHISSESSSLPWISPLKFTKPAKPKPDPPPETAAEPPRKRKFISHDGAIDLIRREKDPQHALKIFNMVSQQKGFHHNNATYAIILEKLARCNKFHTVDQVIHQMTYETCKFHEGIFVNLMNYFSKSSLHEKVLQAFFSIQPIVRDKPSPKALTTCLNLLLESNRVDLARQLLLHAKRGLTHKPNVCVFNILVKYHCKNGDLESAFEVVKEMRNCEFSYPNLVTYSTLMDGLCRNGRLREAFQLFEEMVSRDHIVPDPLTYNVLINGFCREGKPDHARNVIEFMKSNGCYPNVYNYSALVNGLCKIGKLEDAKGLLAEMKNAGLTPDAVIYTSLINYLCTNGQVGEGIQLLEEMKENKIQADTVTFNVILGGLCREGRFEEALDMLGKLPQQGVYLNKGSYRIVLNSLTRKGELKRAKELLGLMQSRGFLPHYATSNELLVCLCKGGMADDAARALFDLVEMGFQPGLETWEVLIGLICRDRKLLYVFELLDELLVTDT* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0949 519 Gene3D Tetratricopeptide repeat domain 166 237 IPR011990 GO:0005515
Vra5g0949 519 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 24 516 - -
Vra5g0949 519 Pfam PPR repeat 307 340 IPR002885 -
Vra5g0949 519 Pfam PPR repeat 202 233 IPR002885 -
Vra5g0949 519 Gene3D Tetratricopeptide repeat domain 445 516 IPR011990 GO:0005515
Vra5g0949 519 Gene3D Tetratricopeptide repeat domain 238 304 IPR011990 GO:0005515
Vra5g0949 519 Gene3D Tetratricopeptide repeat domain 305 376 IPR011990 GO:0005515
Vra5g0949 519 Gene3D Tetratricopeptide repeat domain 377 444 IPR011990 GO:0005515
Vra5g0949 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 451 IPR002885 -
Vra5g0949 519 MobiDBLite consensus disorder prediction 39 59 - -
Vra5g0949 519 TIGRFAM PPR: pentatricopeptide repeat domain 280 313 IPR002885 -
Vra5g0949 519 TIGRFAM PPR: pentatricopeptide repeat domain 384 417 IPR002885 -
Vra5g0949 519 TIGRFAM PPR: pentatricopeptide repeat domain 243 277 IPR002885 -
Vra5g0949 519 TIGRFAM PPR: pentatricopeptide repeat domain 349 382 IPR002885 -
Vra5g0949 519 TIGRFAM PPR: pentatricopeptide repeat domain 316 348 IPR002885 -
Vra5g0949 519 TIGRFAM PPR: pentatricopeptide repeat domain 208 240 IPR002885 -
Vra5g0949 519 TIGRFAM PPR: pentatricopeptide repeat domain 420 451 IPR002885 -
Vra5g0949 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Vra5g0949 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Vra5g0949 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Vra5g0949 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Vra5g0949 519 Pfam PPR repeat family 346 395 IPR002885 -
Vra5g0949 519 Pfam PPR repeat family 240 290 IPR002885 -
Vra5g0949 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Vra5g0949 519 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 24 516 - -
Vra5g0949 519 Pfam PPR repeat 420 449 IPR002885 -
Vra5g0949 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 205 239 IPR002885 -
Vra5g0949 519 Gene3D Tetratricopeptide repeat domain 59 165 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0949 205 515 Glycosyltransferase AT1G05670 28.617 1.12e-40 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0949 - - pvu:PHAVU_009G143500g 910.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0949 5 15800226 15811351 Vra5g0949 5 15800226 15811351 ECH