Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0944 ATGGATTCCATTCCCTTTCGCGATGGCAACATACACGCGATTCTTGACTCTCGATATCTCAACTCGCCACTGGATGTTAATCACACTTTGCAGACTCATTCCTCTCTCATTCGGAGGCTTTCTCAAGAAAGGGAGTTAGAGGGCCACCTTGGCTGTGTCAATGCGGTGGCTTGGAATTCAAAAGGTACATTGTTGATATCCGGATCAGATGATACTCGGATCAATATTTGGAGCTATTCTGGTAGAAAACTTCTACATTCAATTGACACAGGACATACAGCAAATATATTCTGTACTAAGTTTATACCAGAAACTTCTGATGAGCTTGTAGCTTCTGGAGCCGGAGATGCTGAAGTCCGTTTATTTAACTTGTCTCGCCTAAGTGGGAGTGGATCTAGCGACAATTCAATCATTGCTCCATCTGCACTTTACCAATGCCATGCTCGAAGAGTCAAGAAATTGGCTGTTGAAAATGGCAACCCTAATGTAGTATGGAGTGCTAGTGAAGATGGGACATTGAGACAACATGATTTTCGGGAAGGTACCTCTTGTCCTCCAGCTGGGTCTTCACACCAAGAGTGTCGAAATATTCTTCTTGACTTACGAAGTGGTTCTAAAAGATCACTTGCTGATCCTCCTAAACAAGTCCTTTCTTTAAAGTCTTGTGATATTAGTTCAACTAGGCCGCATTTGCTCCTTGTTGGTGGGAGTGATGCCTTTGCACGGTTATATGATAGAAGGATGCTGCCACCTCTAAGCTCATGTCGAAAAAGAATGTCTCCTCCTCCTTGTGTTAATTATTTTTGTCCAATGCATCTTTCTGATCGTGGACATCCAAGCTTACACTTAACTCATGTTACATTCAGTCCTGATGGACATGAGGTTCTCCTCAGCTATAGCGGAGAGCATGCTTACCTGATGAATGTAAATCATGCTGGAGTGAACGAGATGCAATATACTTCAGGTGACGTATCAAAGATGATGACTTACTCTCCGATAGTTAATGGGATAGAGTTGCAGTCTTGTGTGTCTAATGTCTTCCCAAACGGGTTTCCTATTAAAAAGAACATTGCTGCAAAGCTTGACAAGTGCAGGAAACTGATAAAATATGCTAAGAAATCATTGGACAATGGGACACCCTATTATGGAATTGAGGCATGTAATGAGGTTTTGAATGGCTATAGCCATATCATTGGGTCTGCACTTAAACATGAATGCTTGTGCACTCGTGCTGCACTATTGATCAAGAGGGACTGGAAAAACGATGCTCATATGGCTATAAGAGACTGCTATGCTGCTAGAAAAATTGATAATTCCTCCTATAAAGCACTGTTCTACATGTCAGAAGCACTGTCACAGTTGGGTAGACATGAAGATGCCTTGGATTTTGCTGTTGCTTCCCATTCACTGGCCCCACTCAAATCTGAAGTTGCAGAGAGAGTGGAGAATGTGAAGAAGGATATTGCTTTAGCTGAAGCTGAAAAAAATAGCAAGGCAAATGATGGTGCATCAAGGTCTGACATTCGAGGTGGAAGAATATTATCATTAAGTGACATACTCTATCGCCCTGAGGCTAACGGTGATGTTCCACAAGATGGTTCTAGATCAGACAGGGATGATTCTGATTATGATGAAGAATTGGAGTTGGACTTTGAAACGTCAATATCCGGTGACGAGGCACAAGATCTTGATTCAAATATTCTTCATGGAAGTTTAAATGTTAGAATTCACCGAAGAGGTGACTCTAGAGACAATGCAGGTGCTAGTGGTCCAAGCGATTCACCTTCATCTTCGTCACAGAGCAGTAGAACATGTTATCTGCCTGAACCAGCTGTTGATATGAAACAGAGATTTATTGGCCATTGCAATATTGGGACGGACATAAAACAGGCCAATTTTCTTGGTCAAAGAGGAGAATATGTTGCCAGTGGAAGTGATGATGGCAGATGGTTTATTTGGGAAAAGCGTACTGGTAGACTTATAAAAATTCTAAATGGTGATGGATCTGTTGTAAATTGTATACAATGCCATCCATTTGATTTTGTTGTCGCAACCAGTGGGATTGATAGCACAATAAAGATATGGACTCCAAGTGCCCCTGTTCCATCTTCTGTAGCTGGTGGTTCAGCAGGACCAGAAACTGGTGATGTGTTGGCTGCTATGGAGAGCAATCAACAGAAGTTATCCCGTAGCCGCAATTCTATATTGCCCTTTGAGCTTTTGGAACCATTTAGAATGCACGACTTTCCTGAGGGTTCGTTACGCTTGCGTCCATTTGAATGCGCTCAAAGCTAA 2295 0.4218 MDSIPFRDGNIHAILDSRYLNSPLDVNHTLQTHSSLIRRLSQERELEGHLGCVNAVAWNSKGTLLISGSDDTRINIWSYSGRKLLHSIDTGHTANIFCTKFIPETSDELVASGAGDAEVRLFNLSRLSGSGSSDNSIIAPSALYQCHARRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCRKRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHAYLMNVNHAGVNEMQYTSGDVSKMMTYSPIVNGIELQSCVSNVFPNGFPIKKNIAAKLDKCRKLIKYAKKSLDNGTPYYGIEACNEVLNGYSHIIGSALKHECLCTRAALLIKRDWKNDAHMAIRDCYAARKIDNSSYKALFYMSEALSQLGRHEDALDFAVASHSLAPLKSEVAERVENVKKDIALAEAEKNSKANDGASRSDIRGGRILSLSDILYRPEANGDVPQDGSRSDRDDSDYDEELELDFETSISGDEAQDLDSNILHGSLNVRIHRRGDSRDNAGASGPSDSPSSSSQSSRTCYLPEPAVDMKQRFIGHCNIGTDIKQANFLGQRGEYVASGSDDGRWFIWEKRTGRLIKILNGDGSVVNCIQCHPFDFVVATSGIDSTIKIWTPSAPVPSSVAGGSAGPETGDVLAAMESNQQKLSRSRNSILPFELLEPFRMHDFPEGSLRLRPFECAQS* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0944 764 MobiDBLite consensus disorder prediction 579 605 - -
Vra5g0944 764 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 27 763 IPR045151 -
Vra5g0944 764 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 27 763 - -
Vra5g0944 764 Gene3D Tetratricopeptide repeat domain 354 488 IPR011990 GO:0005515
Vra5g0944 764 MobiDBLite consensus disorder prediction 587 605 - -
Vra5g0944 764 Gene3D - 129 315 IPR015943 GO:0005515
Vra5g0944 764 SMART WD40_4 81 123 IPR001680 GO:0005515
Vra5g0944 764 SMART WD40_4 39 78 IPR001680 GO:0005515
Vra5g0944 764 SMART WD40_4 137 177 IPR001680 GO:0005515
Vra5g0944 764 SMART WD40_4 212 245 IPR001680 GO:0005515
Vra5g0944 764 SMART WD40_4 611 654 IPR001680 GO:0005515
Vra5g0944 764 SMART WD40_4 657 696 IPR001680 GO:0005515
Vra5g0944 764 Pfam WD domain, G-beta repeat 43 78 IPR001680 GO:0005515
Vra5g0944 764 Pfam WD domain, G-beta repeat 659 695 IPR001680 GO:0005515
Vra5g0944 764 ProSiteProfiles Trp-Asp (WD) repeats profile. 664 695 IPR001680 GO:0005515
Vra5g0944 764 Gene3D - 25 128 IPR015943 GO:0005515
Vra5g0944 764 MobiDBLite consensus disorder prediction 523 543 - -
Vra5g0944 764 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 78 - -
Vra5g0944 764 Gene3D - 613 750 IPR015943 GO:0005515
Vra5g0944 764 SUPERFAMILY WD40 repeat-like 39 695 IPR036322 GO:0005515
Vra5g0944 764 Coils Coil 474 501 - -
Vra5g0944 764 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Vra5g0944 764 SUPERFAMILY TPR-like 400 472 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0944 Vra-Chr5 15725161 15741049 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0944 K11807 - gmx:100793917 1353.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0944 5 15725161 15741049 Vra5g0944 5 15725161 15741049 ECH