Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0939 ATGCCTTTATTGGTTTCCAGAGGAAGAATCATCAGAAGAAGCATGACATGTCTATGCCTTACCCATTCACTCACTCAAACCCATAACCCCTTCCCTTCTTCTCTACACAATAACAGAAACTCCCTCTTTCAGTTTTTCTCGGCTATTCTCCGACCTTCAATTCGCCCCTTTTCCGCTAAATTCAAGGGTTCTTCTTCTGCACTAATGGCCAATTTCAACGCTGATTCCGTCACTTACCTCACACAGCGAGAAGCCGCTGAGATCGATGAGACGCTCATGGGTCCTCTCGGCTTCAGCGTGGACCAGCTCATGGAATTGGCTGGTTTGAGCGTCGCTGCTTCCATTTCTGAGGTTTACAAACCCACTGAGCATGGTCGGATTCTTACTATATGTGGCCCTGGTAACAATGGTGGTGACGGTCTGGTGGCTGCTCGCCACCTGCATCACTTTGGTTATAAGCCCTTTGTGTGTTACCCAAAGCGTACCCCCAAGCCTCTCTATTCTGGATTAGTTACTCAGCTTGAAGCACTGTCTATCCCTTTCTTGTCAGTGGAAGAACTACCGTCAGATCTTTCAAATGACTTTGACATTCTTGTGGATGCGATGTTTGGATTCTCATTTCATGGTTCTCCCAGACCTCCTTTTGATTATTTGATCCAGAGACTTGTCTCTTTGCATGATAATGATCAAATTGATAAAAAAAGACCATTTATAGTCTCTGTAGATATTCCCTCTGGTTGGCATGTTGAAGAGGGAGATGTTGATGGTACAGGCATTAAGCCTGATATGTTGGTTTCTTTGACAGCCCCAAAATTAGGCGCAAAGAAGTTTGGTGGTCCTCACCACTTTCTAGGAGGTAGATTTGTCCCACCAGCTATTGCAGAAAAGTATAAGCTTGTGCTTCCACCTTATCCTGGAACATCCATGTGTGTTCGAATTGGAAAGCCTCCACAAATTGATATCTCAGCTCTAAGAGAGAATTACATCTCACCAGAATTTCTTGAAGAGCAGGTGGAGGCTGACCCAATTAATCAGTTTCGCAAATGGTTCGATGATGCAATGGCTGCTGGTTTGAAGGAACCAAATGCCATGGCCTTGTCAACTGTAGGGAAGGATGGAAAACCCTCATCACGAATGGTATTGCTAAAAGGGTTGGATAAAGACGGATTTGTTTGGTACACAAACTATGAAAGTCGAAAGGCACGTGAATTGTCTGAAAATCCTCGAGCATCTCTGCTTTTTTACTGGGATGGTTTAAACCGTTCGGTACGGGTAGAAGGGCCTGTTCAGAAAGTCTCTGATGAGGAATCGGAAGAATATTTCCATAGCCGTCCTAGAGGAAGTCAGATTGGAGCAATAGTTAGCAAGCAGAGTACTGTAGTACCTGGTAGGCATGTTCTTTATCAGGAGTACAAAGAACTGGAACAAAAATACGCCGATGGAAGTATGATCCCTAGACCTAACTGGGGAGGATATAGACTCACACCACAACTTTTTGAGTTTTGGCAAGGACAGAAATCTCGCTTGCACGACAGGTTGCAATATACTCCCCATGAGATCAATGGACAGCGGCTGTGGAAGATTGAGCGGTTGGCTCCCTGA 1602 0.4494 MPLLVSRGRIIRRSMTCLCLTHSLTQTHNPFPSSLHNNRNSLFQFFSAILRPSIRPFSAKFKGSSSALMANFNADSVTYLTQREAAEIDETLMGPLGFSVDQLMELAGLSVAASISEVYKPTEHGRILTICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTPKPLYSGLVTQLEALSIPFLSVEELPSDLSNDFDILVDAMFGFSFHGSPRPPFDYLIQRLVSLHDNDQIDKKRPFIVSVDIPSGWHVEEGDVDGTGIKPDMLVSLTAPKLGAKKFGGPHHFLGGRFVPPAIAEKYKLVLPPYPGTSMCVRIGKPPQIDISALRENYISPEFLEEQVEADPINQFRKWFDDAMAAGLKEPNAMALSTVGKDGKPSSRMVLLKGLDKDGFVWYTNYESRKARELSENPRASLLFYWDGLNRSVRVEGPVQKVSDEESEEYFHSRPRGSQIGAIVSKQSTVVPGRHVLYQEYKELEQKYADGSMIPRPNWGGYRLTPQLFEFWQGQKSRLHDRLQYTPHEINGQRLWKIERLAP* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0939 533 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 327 533 IPR000659 GO:0004733|GO:0008615|GO:0010181
Vra5g0939 533 SUPERFAMILY FMN-binding split barrel 333 533 - -
Vra5g0939 533 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 499 512 IPR019740 GO:0016638
Vra5g0939 533 Pfam YjeF-related protein N-terminus 101 273 IPR004443 -
Vra5g0939 533 TIGRFAM yjeF_nterm: YjeF family N-terminal domain 82 276 IPR004443 -
Vra5g0939 533 Hamap NAD(P)H-hydrate epimerase [nnrE]. 81 316 IPR004443 -
Vra5g0939 533 Gene3D - 328 525 IPR012349 -
Vra5g0939 533 PANTHER NAD(P)H-HYDRATE EPIMERASE 74 518 IPR032976 -
Vra5g0939 533 PANTHER NAD(P)H-HYDRATE EPIMERASE 74 518 - -
Vra5g0939 533 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 489 533 IPR019576 -
Vra5g0939 533 Pfam Pyridoxamine 5'-phosphate oxidase 350 436 IPR011576 -
Vra5g0939 533 Gene3D - 76 318 IPR036652 -
Vra5g0939 533 ProSiteProfiles YjeF N-terminal domain profile. 85 301 IPR004443 -
Vra5g0939 533 SUPERFAMILY YjeF N-terminal domain-like 78 308 IPR036652 -
Vra5g0939 533 TIGRFAM pdxH: pyridoxamine 5'-phosphate oxidase 317 533 IPR000659 GO:0004733|GO:0008615|GO:0010181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0939 K23998 - gmx:100795497 947.192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0939 5 15675238 15681505 Vra5g0939 5 15675238 15681505 ECH