Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0884 ATGGCGAACCACCCCCTCTCCGCCGGAATCAGACGTTTTGTGTTCGGGACACGAAATCTTTGTAGCACCGTTGCTTCACGCGCTTCGACGTTGCACGCGCCGTTCTTGCGCAAGCTCAAATCCCCAAAGCAGAATCCATTGCTGGTGCTTCAAAATTGGGTGGACGAAGGCAACGATTTTTCACCCTCCCAGTTCAGAAGCATCGCCAGAACCCTAGTCAAATCGAAGCGCTACCACCACGCCCTTGAGTTATTTAAGTGGATAGAAAATCAGAAGAATTTCCGCATGATCCCAGTTGATCATGCTATGAAATTGGAGTTAATCATTGAAAATTGTGGTTTAATGGAAGCTGAAGAATATTTTATGAATCTACCTGACTCGGCTGCAAAGAAGGCGGCTTGTCTCACACTTCTCCGTGGATATGTAAGATATAGGGATACTACTAAGGCCGAGGCTTTAATGATGAAGCTCTATGAGTTGGGGCTAGTGGTGAGTCCTCACCCTTTTAATGAGATGATGAAGCTGTATCTAGTGACCTGCGACTACAGGAAGGTACCCCTTGTTATCCAGCAAATGAAGCGGAATAAAATACCCTGCAATGTTCTCTCCTACAATCTTTGGATGAATGCCTGTAGTGAGGAAGAAGGATACGGGATTGCAGCAGTAGAGACAGTTTTTAGACAAATGCAAAATGACAAGAACGTTGAAGTGGGATGGAGTAGTCTTGCTACATTGGCCAATGTTTACAAGAAAGCAGGGCAACCTAAGAAAGCCATTCCGGTTCTCAAAGATGCTGAAAAGAAACTGTCTACCTGTAAGCACCTCGGATACTTCTTCCTCATAACACTATATGCTTCTTTGAAAGATAAGGAGGGAGTCTTGCGGTTATGGGAAGCTAGTAAGGCAGTTGATGAAAGAATCAGTTGTGCTAACTACATTTGCATACTAACATGCTTGGTGAAGCTTGGGGATGTTCTGCAAGCCGAGAGAGTCTTCTCAGAATGGGAATCTAATTGTCAAAAGTATGATATCAGAGTCTCTAATGTTCTTTTGGGTGCATATGTGAGGGATGGATTAATGGAAAAAGCTGAATCATTACATCTCCACACATTGCAAAAGGGTGGCTGTCCAAACTATAAGACAATGGAAATTCTTGTAGAAGGATATGTGAATAGGAAAAAAGCAGACGAGGCTTTTATTGCAATGAAAAGAGCTTTGGCTATGACAAAAAATTGTCATTGGAGGCCACCACATGGACTTGTGTTGGCCATTGCGGAGATTTTGGAGAAAGATGGGAATCTTGAATATGCAAACAATTATATTACAGATATCCATAATTTTGGTCTTGCTAGTTTACCATTGTATAAAATATTGCTAAGAATGCACCTTTATGCCAACAAACCACCTTTCCGTATCCTTAAAATGATGGATGAAGATAAGATTGAGATGGATGATGAGACACATTCCATTGTTAAAGCTTTCGCTTTGCTGAAAAGTTTGGAGGTGAAGCAGTAA 1515 0.4211 MANHPLSAGIRRFVFGTRNLCSTVASRASTLHAPFLRKLKSPKQNPLLVLQNWVDEGNDFSPSQFRSIARTLVKSKRYHHALELFKWIENQKNFRMIPVDHAMKLELIIENCGLMEAEEYFMNLPDSAAKKAACLTLLRGYVRYRDTTKAEALMMKLYELGLVVSPHPFNEMMKLYLVTCDYRKVPLVIQQMKRNKIPCNVLSYNLWMNACSEEEGYGIAAVETVFRQMQNDKNVEVGWSSLATLANVYKKAGQPKKAIPVLKDAEKKLSTCKHLGYFFLITLYASLKDKEGVLRLWEASKAVDERISCANYICILTCLVKLGDVLQAERVFSEWESNCQKYDIRVSNVLLGAYVRDGLMEKAESLHLHTLQKGGCPNYKTMEILVEGYVNRKKADEAFIAMKRALAMTKNCHWRPPHGLVLAIAEILEKDGNLEYANNYITDIHNFGLASLPLYKILLRMHLYANKPPFRILKMMDEDKIEMDDETHSIVKAFALLKSLEVKQ* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0884 504 Gene3D Tetratricopeptide repeat domain 269 446 IPR011990 GO:0005515
Vra5g0884 504 Pfam PPR repeat 348 367 IPR002885 -
Vra5g0884 504 PANTHER OS12G0527900 PROTEIN 28 494 - -
Vra5g0884 504 PANTHER OS02G0796400 PROTEIN 28 494 - -
Vra5g0884 504 Gene3D Tetratricopeptide repeat domain 62 268 IPR011990 GO:0005515
Vra5g0884 504 Pfam Pentatricopeptide repeat domain 164 212 IPR002885 -
Vra5g0884 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0884 Vra-Chr5 14854569 14860704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0884 39 434 EF-hand Containing Proteins AT1G02150 30.982 2.14e-72 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0884 - - gmx:100803685 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0884 5 14854569 14860704 Vra5g0884 5 14854569 14860704 ECH