Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0882 ATGGAAAATCTTTGCAACGAAGAACAAAATCCTCTAATAAAGTCAACATCGCAAAACGGATCCAACACTCACATTCACTCTCTCCTCTACCGATCATGTTCCGAATCCAGCAAACTATGGAAAATCGCCGCCCCTTCAATCTTCACCCGCCTAGCCATGTTCTCCATCACCGTCGTCACCCAGTCCTTCGCCGGCCACCTTGCCGACCTCGATCTCGCCGCCATTTCCATCGCCTGCACCGTCCTCATCTCCGTCACCTTCGGCTTCATGTTGGGTATGGCCAGTGCGCTTGAGACGCTATGCGGCCAGGCCTACGGCGCCGGACAGCATCGCATGTTGGGTGTTTATCTGCAACGCTCGTGGGTTGTTCTGTCCCTTGCCTCGATTCTGATGCTGCCGGTGTTCGTGTTCGCGACGCCGCTGTTGAAGTTGGTGGGGCAGCCCGTCGCGGTTGCGGAGCAGGCGGGGCTGGTGGCTGTCTGGTTGATCCCGTTTCATCTCTGTTTCCCGTTTCAGTTCACATTGCAGCGGTTCCTGCAGTGCCAGTTAAAGACCGGTATCGTTGCTTGGGTTTCAGGGGCGGCTCTTGCGATTCATGTTTTAGTGAGTTGGGTTTTTGTTTATCGGATGAGAATTGGGATCGTTGGGGCTGCACTTTCCATTGGTTTCTCGTGGTGGCTCTCGGTTTTGGGAATGCTCGGGTATACACTCTATGGTGGATGCCCGTGTTCGTGGACTGGTTTTTCTGCTGAAGCTTTTGTCGGTCTCTGGGAATTCTTTAAACTCTCTTTGGCTTCTGGGATCATGCTTGCGTTAGAGAATTTCTATTACAGACTGTTGCTTATAGTCTCTGGATATATGCACAACACTGAGATTGCAATTGATGCTCTTTCTGTTTGTGTGACGATATATGGCTGGGAATCCATGATACCACTTGCATTTTTGGGTGCAACCGGGGTTCGAGTAGCAAACGAGCTTGGCGCAGGCAATGCGGAAGGTGCAAAATTTGCAACTTTGGTTTCTGTGGTAAATACTGTACTGGTGGGATTTATATTTTGGTTGGTAATTGTGTTCTTCAACAAGAATCTGGCCTTGATCTTTACATCGAGCTCGTCAGTTATCCAAATAGTCAATGATCTGGCAATGTTGTTAGCTTTTACTGTTCTTCTTAATTGCATTCAACCAGTTCTTTCAGGGGTGGCAGTAGGATCTGGTCGTCAAGCAGTGGTGGCATATATAAACATTGGCAGTTACTACTTGGTCGGAATACCTCTGGGGGTTCTCCTAGGCTGGTTTCTTCCTTCGAGTATTGTTGGAATGTGGAGTGGAATGATGAGTGGAACAGTGGTTCAAACATTGATCTTGGCTACTATTACGATGAGATATGATTGGGAGAAAGAGGTTCAGAAGGCTCAAATTCTTATCAAAGAGGAAGCAACATCCAACCAATAA 1452 0.4835 MENLCNEEQNPLIKSTSQNGSNTHIHSLLYRSCSESSKLWKIAAPSIFTRLAMFSITVVTQSFAGHLADLDLAAISIACTVLISVTFGFMLGMASALETLCGQAYGAGQHRMLGVYLQRSWVVLSLASILMLPVFVFATPLLKLVGQPVAVAEQAGLVAVWLIPFHLCFPFQFTLQRFLQCQLKTGIVAWVSGAALAIHVLVSWVFVYRMRIGIVGAALSIGFSWWLSVLGMLGYTLYGGCPCSWTGFSAEAFVGLWEFFKLSLASGIMLALENFYYRLLLIVSGYMHNTEIAIDALSVCVTIYGWESMIPLAFLGATGVRVANELGAGNAEGAKFATLVSVVNTVLVGFIFWLVIVFFNKNLALIFTSSSSVIQIVNDLAMLLAFTVLLNCIQPVLSGVAVGSGRQAVVAYINIGSYYLVGIPLGVLLGWFLPSSIVGMWSGMMSGTVVQTLILATITMRYDWEKEVQKAQILIKEEATSNQ* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0882 483 Pfam MatE 267 427 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g0882 483 Pfam MatE 45 205 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g0882 483 TIGRFAM matE: MATE efflux family protein 45 441 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g0882 483 MobiDBLite consensus disorder prediction 1 20 - -
Vra5g0882 483 PANTHER MULTIDRUG RESISTANCE PROTEIN 16 472 - -
Vra5g0882 483 CDD MATE_eukaryotic 35 470 IPR045069 GO:0042910|GO:1990961
Vra5g0882 483 PANTHER PROTEIN DETOXIFICATION 16 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0882 Vra-Chr5 14820830 14825571 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0882 K03327 - gmx:100814869 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0882 5 14820830 14825571 Vra5g0882 5 14820830 14825571 ECH