Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0881 ATGGAGAGCTTCAAGGGAGACGACGAAACAGAGAAAAATCTTGCAGAAGCTCTCCTTCAACCGGAAGAGGCAGCTATTCATGCAGAACAACGACAGGACCAACCGTACGAGGAACAAAGTTTCGGTAACAAACTCTGGGTCGAAACGAAGAAGCTATGGGTAATTGTGGGGCCCTCCATCTTCAGCCGCCTGGCCTCGTACAACATGAACGTTATCACCCAAGCCTTCGCCGGTCACTTGGGTGAGGTGGAACTCGCCGCCATTTCTATAGCGAACACCGTCATCGTCGGCTTCAATTTCGGCCTCCTGCTGGGGATGGCGAGTGCGTTGGAGACACTGTGCGGGCAAGCGTATGGCGCGAAGAGATACCACATGTTGGGAATATACATGCAGAGGTCATGGATTGTTCTCTTCCTGTGCTGTTTCGTGCTGTTGCCGTTTTACATATTCGCGACGCCGCTTCTGAAGTTTCTGGGGCAACCGGATGAGGTGGCGGAGTGGAGCGGCGTGGTGGCGGTGTGGCTGATTCCTCTTCACTTCAGTTTTGCGTTTCAGTTTCCTCTGCAGAGGTTCCTCCAGTGCCAGCTGAAGACGGCGGTTATTGCGTGGGTATCCCTGGCGGGTTTGGTGGTTAATGCGGTAACTAGTTGGCTCTTGGTTTATGTGTGGGATTTTGGACTTTATGGTGCAGCTATTTCCTTGGACATATCATGGTGGGTTTTGGTTTTTGGCATGTATGCTTACACTGCCTATGGTGGATGCCCTTTAACTTGGAAAGGTTTCTCAGTTGAAGCCTTTTCTGGACTCTGGGAATTCCTCAAACTCTCTTCTGCTTCTGGGGTCATGTTATGCTTGGAGAATTGGTACTACAGAATACTCGTTCTTATGACTGGTCAGTTGGAGAATGCCACCATAGCCGTTGATGCCTTGTCTATATGTATGACCATTAATGGGTGGGAGATGATGATTCCCCTGGCTTTTTTCGCCGGTACAGGAGTAAGGGTGGCAAACGAGCTAGGTGCAGGGAATGGAAAAGGAGCAAAATTTGCAACGCAAGTGTCAGTGACAGAATCAATAGTGATTGGGGTTGTGTTCTGCGTTCTGATAATGATGTTTCATGACTATTTGGCTTACATATTCACTACCAGCTCTTCGGTACTACAAGCAGTTGACCACATGTCATTCCTCTTAGCCATAACAATTCTTCTCAACAGCGTTCAGCCAGTTTTATCAGGAGTGGCTGTTGGTTCGGGATGGCAAGCATATGTAGCATACATAAATATAGGAAGCTATTATCTCATCGGTCTCCCACTCGGAATTATCATGGGATGGGTATTCAAAACTGGTGTTGCTGGTATATGGACTGGCATGATCTTCGGTGGCACAGCACTTCAAACATTGATACTCATCATAGTAACCCTACGATGTGATTGGGAAAAAGAGGCTGATAAAGCTCAGTTTAGTGTGAATAAGTGGTCAAGATCTAATTCCAATGGCGCACTGCAAATCCCCAATTAG 1518 0.4783 MESFKGDDETEKNLAEALLQPEEAAIHAEQRQDQPYEEQSFGNKLWVETKKLWVIVGPSIFSRLASYNMNVITQAFAGHLGEVELAAISIANTVIVGFNFGLLLGMASALETLCGQAYGAKRYHMLGIYMQRSWIVLFLCCFVLLPFYIFATPLLKFLGQPDEVAEWSGVVAVWLIPLHFSFAFQFPLQRFLQCQLKTAVIAWVSLAGLVVNAVTSWLLVYVWDFGLYGAAISLDISWWVLVFGMYAYTAYGGCPLTWKGFSVEAFSGLWEFLKLSSASGVMLCLENWYYRILVLMTGQLENATIAVDALSICMTINGWEMMIPLAFFAGTGVRVANELGAGNGKGAKFATQVSVTESIVIGVVFCVLIMMFHDYLAYIFTTSSSVLQAVDHMSFLLAITILLNSVQPVLSGVAVGSGWQAYVAYINIGSYYLIGLPLGIIMGWVFKTGVAGIWTGMIFGGTALQTLILIIVTLRCDWEKEADKAQFSVNKWSRSNSNGALQIPN* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0881 505 TIGRFAM matE: MATE efflux family protein 58 454 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g0881 505 CDD MATE_eukaryotic 48 484 IPR045069 GO:0042910|GO:1990961
Vra5g0881 505 PANTHER MULTIDRUG RESISTANCE PROTEIN 34 486 - -
Vra5g0881 505 Pfam MatE 58 218 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g0881 505 Pfam MatE 280 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vra5g0881 505 PANTHER PROTEIN DETOXIFICATION 34 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0881 Vra-Chr5 14806195 14813839 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0881 K03327 - gmx:100500204 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0881 5 14806195 14813839 Vra5g0881 5 14806195 14813839 ECH