Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0874 ATGCCTTCCTCTACTGCTTTGCTTTTCGGCTCGCTCATAGCAATCACCATGCTTCTGCCAACCCTCGCAACCGTCCACACCGTCGGAGATTCTTCAGGTTGGGCAATTGGTGCTGATTATAGTTCATGGACGGGTGACAAAACCTTCGCAGTGGGTGATACTCTTGTGTTCAACTATGGAGCTGGGCACACAGTGGATGAAGTTAAAGAGAGTGACTACAAATCATGCAGCGCAGGGAATTCAATTAGTACAGACAGTAGTGGCGCAACCACCATTGCCCTCAAGACTGCAGGCACTCATTACTTCATATGTTCTGTTCCCGGACATTGTTCTGGCGGCATGAAACTTGCCGTCACTGTTAAAGCAGGAAAAGACACTACTCCTTCAACTGGGAAGGCTCCACCTTCTTCTGATGGCACAGCCACCACAACCACTGCTGCTAGATCAAACTCGGCTTCAACAACTGGTGTGTTTTCAGTTGTTGCCATGTTGATTGTTTCATGGATCTCTTTCTTTGGCTTGCGCATGGCGTGA 534 0.4869 MPSSTALLFGSLIAITMLLPTLATVHTVGDSSGWAIGADYSSWTGDKTFAVGDTLVFNYGAGHTVDEVKESDYKSCSAGNSISTDSSGATTIALKTAGTHYFICSVPGHCSGGMKLAVTVKAGKDTTPSTGKAPPSSDGTATTTTAARSNSASTTGVFSVVAMLIVSWISFFGLRMA* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0874 177 PANTHER BLUE COPPER PROTEIN 14 142 IPR039391 GO:0009055
Vra5g0874 177 Gene3D - 22 126 IPR008972 -
Vra5g0874 177 SUPERFAMILY Cupredoxins 23 120 IPR008972 -
Vra5g0874 177 ProSiteProfiles Phytocyanin domain profile. 24 122 IPR003245 GO:0009055
Vra5g0874 177 ProSitePatterns Type-1 copper (blue) proteins signature. 98 114 IPR028871 -
Vra5g0874 177 CDD Phytocyanin 24 120 - -
Vra5g0874 177 PANTHER BLUE COPPER PROTEIN-LIKE 14 142 - -
Vra5g0874 177 Pfam Plastocyanin-like domain 34 114 IPR003245 GO:0009055
Vra5g0874 177 MobiDBLite consensus disorder prediction 124 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0874 Vra-Chr5 14682859 14683864 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0874 8 120 Miscellaneous Gene Families AT1G22480 58.407 3.28e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0874 - - var:108331136 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0874 5 14682859 14683864 Vra5g0874 5 14682859 14683864 ECH