Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0871 ATGCCCCTCCAGCCATTATTCTGCGGTTCAAAAGTCGCATCCCAATCCACACTTTTCGCTTCGGTGTTTTCCGCAAGAAACAATGCCGGCCGCTGTTCTTTCACCGGAAATTCGTCAGTCCGTGGCGCAAGGCCGGTGAGGTTTATGAAGCAAGCATCGGGAAGCATAACGAGCGATGAACATGGAGTTTTTAGCGAGACAATGGATCGTTCCAAACACAGGACACCTAATGCTTATGGCGGTCGTGCTCAAGAAGGGGTTCTTGAGGAAGAATCCTCCAAAGTAATAGAGAGCAGACCATCATGGAAAACTTTCCCAGGCCAGGCATTTCCATTGGGTGTATCGGAAGTTGACAGTGGCATCAATTTTTCTATTTTTTCACGACATGCAACTGCTGTCACACTTTGTTTGGTCCTTCCTGAGAGGGGAAGTATAGGTACATTGAATGGCGGCATGATAGAAATGGTATTGGATCCTGATTTGAACAAAACTGGGGACATTTGGCACATTTGTATTGAGGATCTTCCTCGAAGCAATGTTCTATACGGATATCGCATAGATGGACCTCAAGATTGGGGTAAGGGGCATCGATTTGACAGCAACATTGTGCTTGTTGATCCTTATGCAAAACTAGTTGAAGGCCGAAGATATTTTGGGGATATTAGCATGAAGTTGTCTAAGTTTCTTGGCACATATGATTTTGACAGCTTGCCTTTCGATTGGGGAGAAAATTACAAGCTTCCAAATATTTCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAATTGATGAATCTAGTGGTTTGAACAGCAACATTCGTGGTAGCTATCTCGGTGTGATTGAAAAGATTCCACACCTTCTAGAGCTTGGTATCAATGCAGTAGAATTGCTGCCCGTCTTTGAGTTTGATGAGTTGGAATTCCAGAGGCGTCGAAATCCCAGAGATCACATGATTAATACGTGGGGTTATTCTACAATAAATTTCTTTTCTCCTATGAGTCGCTATGCTAGTGCTGGTGGAGGATCAGTTAATGCTTCTCGAGAGTTCAAAGAGATGGTTAAAGCCTTACATTCTTCTGGTATAGAGGTTATTTTGGATGTGGTCTATAATCATACTAATGAGGCTGATGATGCCAATCCTTACACTACCTCATTCCGTGGCATAGATAATAAGGTTTATTACATGCTGGACAATAATGGGCAATTGCTGAACTTCTCTGGCTGTGGTAATACATTAAACTGTAACCATGCTGTGGTTATGGACCTAATTCTTGACAGCCTAAGACACTGGGTCACTGAATATCATGTGGATGGATTTCGATTTGATCTTGCAAGTGTCATGTGTCGAGGAGTTGATGGCTCCCCCCTTAACGCCCCCCCGATTATTAGGGCAATTGCTAAAGATGCAGTCTTATCAAGATGTAAAATTATTGCAGAGCCTTGGGATTGTGGAGGTCTTTATCTTGTTGGGAGTTTTCCAAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTACGGAAATTTATTAAGGGTGATTATGGTGTAAAGGGGAGCTTTGCTACTCGTGTTGCTGGATCTTCTGATCTTTACAGAGTGAACAAGCGAAGGCCATATCATAGTATTAATTTCGTTATTGCACACGACGGATTCACCTTGCGTGACCTTGTTTCATACAATTTGAAGCACAATGAAGCCAATGGGGAAGGTGGAAATGATGGTAGCAATGATAATTTTAGTTGGAATTGTGGTTTCGAAGGGGAAACTGATGATGCTAGTATAAGAGCTTTGCGATCACGGCAAATGAAAAACTTTCACTTGGCACTAATGATATCTCAGGGTACACCAATGATGCTAATGGGAGATGAATATGGTCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACCGCCATAAATAATTTTTTGTGGGATCAGTTGGATGCCCGGAAGAGTGACCACTTCAGGTTTTTCTCGAAGGTGATAAAGTACAGGCATTCCCATGAAGTATTCAGTCATGAAAGTTTTCTCAGTAAGAATGAAATAACATGGCATGAAGACAATTGGGAAAATCATGACAGCAGATTTCTTGCATTCACGCTTCATGAAAGGAGCGGGGCAGATGTCTATTTGGCATTTAATGCTCACGATTACTTTATCAAAGCTCTGCTGCCCACACCTCCAGAAAAGAGGAAATGGTTCCGTGTGGTGGACACTAATCTCAAATCACCTGACGACTTTGTTCTTGATGGTGTCCATAGCATAGGAAACACGTACAATATAGCTCCATACTCCTCCATTCTTCTTGAGGCGAAGTTTTGA 2352 0.4226 MPLQPLFCGSKVASQSTLFASVFSARNNAGRCSFTGNSSVRGARPVRFMKQASGSITSDEHGVFSETMDRSKHRTPNAYGGRAQEGVLEEESSKVIESRPSWKTFPGQAFPLGVSEVDSGINFSIFSRHATAVTLCLVLPERGSIGTLNGGMIEMVLDPDLNKTGDIWHICIEDLPRSNVLYGYRIDGPQDWGKGHRFDSNIVLVDPYAKLVEGRRYFGDISMKLSKFLGTYDFDSLPFDWGENYKLPNISEKDLVIYEMNVRAFTIDESSGLNSNIRGSYLGVIEKIPHLLELGINAVELLPVFEFDELEFQRRRNPRDHMINTWGYSTINFFSPMSRYASAGGGSVNASREFKEMVKALHSSGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMLDNNGQLLNFSGCGNTLNCNHAVVMDLILDSLRHWVTEYHVDGFRFDLASVMCRGVDGSPLNAPPIIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDYGVKGSFATRVAGSSDLYRVNKRRPYHSINFVIAHDGFTLRDLVSYNLKHNEANGEGGNDGSNDNFSWNCGFEGETDDASIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRNGNNNSYGHDTAINNFLWDQLDARKSDHFRFFSKVIKYRHSHEVFSHESFLSKNEITWHEDNWENHDSRFLAFTLHERSGADVYLAFNAHDYFIKALLPTPPEKRKWFRVVDTNLKSPDDFVLDGVHSIGNTYNIAPYSSILLEAKF* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0871 783 Gene3D - 690 783 IPR013780 -
Vra5g0871 783 SUPERFAMILY E set domains 106 243 IPR014756 -
Vra5g0871 783 CDD AmyAc_Glg_debranch 239 678 - -
Vra5g0871 783 CDD E_set_GDE_Isoamylase_N 110 259 IPR044505 -
Vra5g0871 783 Gene3D Immunoglobulins 92 229 IPR013783 -
Vra5g0871 783 SMART aamy 259 666 IPR006047 GO:0005975
Vra5g0871 783 SUPERFAMILY Glycosyl hydrolase domain 689 782 - -
Vra5g0871 783 Pfam Alpha amylase, catalytic domain 280 397 IPR006047 GO:0005975
Vra5g0871 783 Gene3D Glycosidases 235 689 - -
Vra5g0871 783 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 111 209 IPR004193 GO:0004553|GO:0005975
Vra5g0871 783 SUPERFAMILY (Trans)glycosidases 238 682 IPR017853 -
Vra5g0871 783 PANTHER GLYCOGEN DEBRANCHING ENZYME 85 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0871 Vra-Chr5 14647354 14667821 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0871 82 782 Glycoside Hydrolase AT4G09020 75.926 0.0 1152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0871 K01214 - gmx:100806342 1457.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0871 5 14647354 14667821 Vra5g0871 5 14647354 14667821 ECH