Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0870 ATGATTCGAGGGATGAGTCTTCAGGCTCCCATCACTTGGTGTTTGTGTTTCAAACCAAAACCAAAAACAAACACTACAAATATGCTGCCACGGCTACACTCTCGCACTCGCAGCCGCCAAGGATATATTACAACCGTTACAAACGCGATGGCGCTTGTTTTTGAGGTTCTTGGCAGATTCAACCGTGCTCGCGCTGCTCGGTTGACACTCCCTCATCATGTGTGCCAAACTCCTTTGTTTATGCCTGTGGGCACACAAGGAACAATAAAGGGATTGACAAATAGTCAGCTTGAGGATATAGGTTGCCAAATAATACTTGGAAATACTTATCACTTGGCCCTTCGACCTACTTCTGAGCTTCTTGATGAAGTTGGCGGCCTTCATAATTTTATGAATTGGCAAAGGGGTCTGCTTACAGATTCTGGTGGCTTTCAAATGGTTTCACTGTTGCATCTTGCTGACATCACAGAAAAAGGTGTGACATTTCAGTCACCGGTTGATGGAAAGCCAATGCTTCTAACACCAGAGGAATCAATTCAAATCCAAAACAGAATTGGAGCAGATATCATTATGGCTCTTGATGATGTTGTAAAGACCACCATTACTGGTCCACGAGTTGAGGAAGCTATGTATCGAACACTTAGATGGATAGACAGATGTATAGCAGCTCACAAGAGACCTCATGATCAAAACTTATTTGGTATTGTTCAAGGTGGTTTAGATCCTATATTGAGGGATATCTGTGCTAAAGGTTTGGTGGACCGCAATTTGCCTGGCTATGCTATTGGTGGTCTTTCAGGCGGTGAAGATAAAAATTCATTTTGGCGAGTTGTTGCTCAGTGCACTGCCGCTTTGCCAGAGGATAAACCACGATATGTTATGGGAGTTGGTTATCCTCTTGATATTGTTGTTTGTAGTGCTTTGGGTGCTGATATGTATGACTGCGTGTATCCCACCCGTACAGCACGCTTTGGCACTGCTCTCATTCCCGAGGGAGTATTGAAATTAAAACACAAAGCAATGGCTGAAGACACCCGTCCAATTGATCCCGCTTGCCCTTGTATGGTTTGCAAGAACTATACCAGGGCTTACATCCATTGCCTTGTGACAAAAGATGCAATGGGATCTCAGCTTTTGTCGTATCATAATTTATACTACATGCTGCAGCTCAGTAGGAATCTACACTTTTCAATAGTTGAAGGAAGGTTCCCAGAGTTTGTATGTGACTTTCTACACAAAATGTTTCCGAAAGGTGATGTTCCTGAATGGGTCTGCGATGCTATGGAGGTGGCTGGAATAGACATTTCTTCCTGCTGTGCTCCATTTTCATCATGCGAAGAATCTGTTTCTACCGAAGAAGTTATTTTAGCGGGGTAA 1377 0.435 MIRGMSLQAPITWCLCFKPKPKTNTTNMLPRLHSRTRSRQGYITTVTNAMALVFEVLGRFNRARAARLTLPHHVCQTPLFMPVGTQGTIKGLTNSQLEDIGCQIILGNTYHLALRPTSELLDEVGGLHNFMNWQRGLLTDSGGFQMVSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRVEEAMYRTLRWIDRCIAAHKRPHDQNLFGIVQGGLDPILRDICAKGLVDRNLPGYAIGGLSGGEDKNSFWRVVAQCTAALPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALIPEGVLKLKHKAMAEDTRPIDPACPCMVCKNYTRAYIHCLVTKDAMGSQLLSYHNLYYMLQLSRNLHFSIVEGRFPEFVCDFLHKMFPKGDVPEWVCDAMEVAGIDISSCCAPFSSCEESVSTEEVILAG* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0870 458 SUPERFAMILY tRNA-guanine transglycosylase 50 413 IPR036511 GO:0006400|GO:0016763
Vra5g0870 458 PANTHER QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 47 438 - -
Vra5g0870 458 Hamap Queuine tRNA-ribosyltransferase [tgt]. 52 413 IPR004803 GO:0008479|GO:0101030
Vra5g0870 458 Gene3D - 49 416 IPR036511 GO:0006400|GO:0016763
Vra5g0870 458 TIGRFAM Q_tRNA_tgt: tRNA-guanine transglycosylase 54 414 IPR004803 GO:0008479|GO:0101030
Vra5g0870 458 Pfam Queuine tRNA-ribosyltransferase 62 414 IPR002616 GO:0006400|GO:0016763
Vra5g0870 458 TIGRFAM tgt_general: tRNA-guanine family transglycosylase 54 414 IPR002616 GO:0006400|GO:0016763
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0870 K00777 - gmx:100819664 851.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0870 5 14628308 14636306 Vra5g0870 5 14628308 14636306 ECH