Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0862 ATGGCCACCGCCGCTTCCAACTCTCTCTTTCAAACCAAATCCATTCTTCCAACCCACCCTGTCTTGCCTTCCTCCACCACCCAATGCTACTCCGTTCCAGGGTCAAGACCCAAGCCTAGGCCCATCCAATCCGTTCAAGCAGCCGGCAACTCCGTCAATGTAGTAACCGACGGCAAACAGCAGCAACCGAGGCACGAGGCCAAGTGGGCCGTGGACAGCTGGAAGTCCAAAAAGGCTCTCCAGCTCCCGGAATACCCGAACCAAGAGAAGCTCCGGGCGGTGCTCAAGAGCCTCGAAACGTTCCCTCCCATCGTCTTCGCCGGAGAGGCTCGCAACCTCGAGGAGCGCCTCGCCGCCGCCGCCGTGGGGAACGCGTTCCTACTCCAGGGCGGAGACTGCGCCGAGAGCTTCAAGGAGTTTAATGCCAACAACATCCGCGACACCTTCAGAATCCTCCTCCAGATGAGTGTGGTTATGATGTTCGGTGGCCAGATGCCCGTTATTAAGGTGGGACGTATGGCGGGTCAGTTCGCGAAACCGAGATCGGAGCAGTTGGAGGAGAAGAACGGAGTGAAACTCCCCAGTTACAGAGGCGACAACGTGAACGGAGATGCGTTTGAAGAGAAAGCCAGAATTCCAGATCCTGAAAGGATGATTAGAGCGTATAGTCAATCCGCTGCTACTCTGAATCTTCTCAGGGCATTCGCCACTGGAGGCTACGCCGCTATGCAAAGGGTTGGTCAATGGAATTTGGACTTCACAGAGCACAGCGAACAAGGAGACAGGTACCTAGACTTTGCACACCGAGTGGATGAGGCCCTTGGTTTCATGGCTGCTGCAGGCCTCACGGTGGAGCATCCTATAATGAAAACAACTGAGTTCTGGACATCACATGAATGTCTGTTATTGCCATATGAACAATCACTCACCAGGTTGGATTCAACTTCTGGTCTCTACTATGACTGCTCCGCTCATATGCTTTGGGTTGGGGAACGGACCAGGCAGCTGGACGGTGCTCATGTTGAGTTTCTAAGAGGAGTTGCCAATCCTCTCGGAATCAAGGTAAGTGATAAGATGGATCCAAATGAGCTTGTTAGACTGATCAACATTTTGAACCCCCAAAACAAACCCGGAAGAATAACTGTGATCACGAGGATGGGAGCTGAAAATATGAGGGTCAAGCTTCCACATCTGATCAGAGCAGTACGCAGAGCTGGACATACTGTAACTTGGGTCAGTGATCCTATGCATGGAAACACCATAAAGGCTCCGTGTGGACTCAAAACTCGCCCCTTTGATGCAATCAGGGCGGAGGTGAAAGCATTCTTCGACGTGCATGAACAGGAAGGAAGCCACCCAGGTGGCGTTCATCTAGAGATGACGGGTCAGAATGTGACTGAGTGCATTGGTGGGTCGAGAACTGTTACCTTTGATGATCTGGGTTCACGTTACCACACACACTGTGATCCCAGGCTTAATGCTTCGCAATCTCTTGAGCTTGCTTTCATAATTTCTGAACGCCTCCGAAACCGTAGGATCGGATCGGATCGCGGCAGCATCTTTTCTCTGTAG 1572 0.5229 MATAASNSLFQTKSILPTHPVLPSSTTQCYSVPGSRPKPRPIQSVQAAGNSVNVVTDGKQQQPRHEAKWAVDSWKSKKALQLPEYPNQEKLRAVLKSLETFPPIVFAGEARNLEERLAAAAVGNAFLLQGGDCAESFKEFNANNIRDTFRILLQMSVVMMFGGQMPVIKVGRMAGQFAKPRSEQLEEKNGVKLPSYRGDNVNGDAFEEKARIPDPERMIRAYSQSAATLNLLRAFATGGYAAMQRVGQWNLDFTEHSEQGDRYLDFAHRVDEALGFMAAAGLTVEHPIMKTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVRLINILNPQNKPGRITVITRMGAENMRVKLPHLIRAVRRAGHTVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVKAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLGSRYHTHCDPRLNASQSLELAFIISERLRNRRIGSDRGSIFSL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0862 523 MobiDBLite consensus disorder prediction 23 43 - -
Vra5g0862 523 Pfam Class-II DAHP synthetase family 69 505 IPR002480 GO:0003849|GO:0009073
Vra5g0862 523 SUPERFAMILY Aldolase 60 509 - -
Vra5g0862 523 Gene3D Aldolase class I 252 510 IPR013785 -
Vra5g0862 523 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 30 517 IPR002480 GO:0003849|GO:0009073
Vra5g0862 523 TIGRFAM DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 69 512 IPR002480 GO:0003849|GO:0009073
Vra5g0862 523 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 2, CHLOROPLASTIC 30 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0862 Vra-Chr5 14544286 14548913 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0862 K01626 - gmx:100809016 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0862 5 14544286 14548913 Vra5g0862 5 14544286 14548913 ECH