Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0857 ATGGCTTGGCGCTTCTCCTCCTTCGTCTCCACCGTCGAATCCTCAAAAACCCTAAACCCTAACCCTTTCTCCTCCACAGCCCCATTCTCCACCTCCTTCCTTGTCACCAAAACCCCCAAAAAGTTCAAGAAAAAACGTAAGCCCAAGCCCAGCCCTCGAACCTCTCCGGTCCAGACCCAGCCCAACCTCATTCCCTCGCTCGAGCGCATTCTCCACCGCGACGCCCTCCTACGCTTCGTCACGCGCTCCAAGCAGTTCCTCTCCGCCCAGCCGGAGCACGTCCTCCGCCTCGATGACGCCGGCAAGCTCCACCGCGAGCTCGGATTCCCGCGCGGCCGTAAGGTCTCCCGCTTCCTCCAGCGCCACCCCCTCCTCTTTCAAACCTACCGTCACACCGACGGCAAGTCCTGGCTCGGCTTCACTGATCTCATGGAGGACCTTCTCGCTGAGGAGCACTCCCTCATGGACGCAATGGAACTGAACCGCGTCGAGAAGGTTCGCAAACTCCTTATGATGTCCGCGCGCAACCGCATCCCCTTGAGCAAAATCCACCACTGCAGAACCCTCTTTGGCATCCCCGATGATTTCCGCGACAGGGTCGCCAAATACCCTGACTTTTTCAAAGTAGTGGTTGACAGCGACGGCAAGAGGGTGCTGGAGTTGGTGAAGTGGGACCCGCTTCTCGCCGTGAGTGCTCTTGAGAGGGAGTTCGTTGTTGACGAGGATTCGGCTAAGCGGAGGTTTAGGTTTCCGGTGAAGTATGGGAAGGATTTGGAATTGGAATTGGACGATAATAGGAAGCTTGATTTGCTGAACTCCCTTCCCTTGGTGTCTCCCTATTCGGATGGGCATAGGTTTGATTTGTGGACGTTGGAGGCGGAAAAGTATCGGGTCGGGTTGATTCATGAGTTCTTGAGCTTGACTTTGGAGAAGAGGGCTTCCATTCATCACCTTGTGGAGTTCAAGGAGGAGTTTAGTTTGACGAAGCATACTTATCAGATGCTGCGGAAACAGCCCAGAGCGTTTTACTTGGCAGGGACTGAGATGAATTGGGCTGTGTTCTTGAAGGATGCCTATGACGAGAATGGGGCTTTGATTGACAAGGATCCCCAGTTATGGATTGCACAACAAATGAAGATTATAAAAATTTGTGAGTTCGGGCTTGGAGTGATACAAAAGCTATAG 1185 0.5367 MAWRFSSFVSTVESSKTLNPNPFSSTAPFSTSFLVTKTPKKFKKKRKPKPSPRTSPVQTQPNLIPSLERILHRDALLRFVTRSKQFLSAQPEHVLRLDDAGKLHRELGFPRGRKVSRFLQRHPLLFQTYRHTDGKSWLGFTDLMEDLLAEEHSLMDAMELNRVEKVRKLLMMSARNRIPLSKIHHCRTLFGIPDDFRDRVAKYPDFFKVVVDSDGKRVLELVKWDPLLAVSALEREFVVDEDSAKRRFRFPVKYGKDLELELDDNRKLDLLNSLPLVSPYSDGHRFDLWTLEAEKYRVGLIHEFLSLTLEKRASIHHLVEFKEEFSLTKHTYQMLRKQPRAFYLAGTEMNWAVFLKDAYDENGALIDKDPQLWIAQQMKIIKICEFGLGVIQKL* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0857 394 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 1 375 IPR045040 GO:0003723
Vra5g0857 394 Pfam Plant organelle RNA recognition domain 65 378 IPR021099 GO:0003723
Vra5g0857 394 PANTHER OS09G0473400 PROTEIN 1 375 - -
Vra5g0857 394 MobiDBLite consensus disorder prediction 38 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0857 Vra-Chr5 14438121 14441972 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0857 - - gmx:100809565 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0857 5 14438121 14441972 Vra5g0857 5 14438121 14441972 ECH