Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0856 ATGGCCTTGTGCAGGTGTCTCTCCTTTTTTACTGGAAAGAAAGAGAAAAACAAGGGTGCTGCTGAAGGGTCTTCAACCGGGGACCTTAAAGCTCAACTTGGCGAAATACAGCACCCGAAGATTTCATCAGAGCGTCGTGATTTGAAGCCGGCCACCCTTGATGTCGCGGTTCCCTTTGGTGTGCAGAAGAATTCAAGGGGAAATGTGAGGATTATGAATCATGAGAGTCCTGCGAAAACTGAAGTGGAGGAAGCTTATGAAGGAGAAGACGAGCATGAGCAGTCTCCTTCCATCAAGAGGGAGCTCTCTGATTTTGATCTTCAAGTCCACCAAGCTGCTGCAAACAAAGGAATATGTGATCCATCAAATGAAGAGATAAAATACCCGAGTGCGTATGAAGACCAAGCTAACATTCAATTCGAAGACACGGACCATAAATACAGCATAAAGAGTGATGATATAATCCAAAGTGGACATGTCAGTGATCCCGGGATTGGCAAGACTGACTTTTGGGCTTCTCCAGAGCTCAAGAGATCTTGTTCTAACCTGGAAAGAAGGGATGTACTTATGAAGACTTCTCATCTCTTTCCAACTTCCAAGTCACAGTCTTTTGAGGATTTACACGGATTATCAGCGTATCAGATGGCTAATCTAGAAAGCCCCAGGTCTGCGATGACTCACTGCAGTGCTGATAAAGTGATGTTGAAAAGGCATTCCTCAAGTCAAGTTCTCCCTTCTAGAAGTAAAAGATTGTGGTGGAAGTTGTTCCTCTGGAGCCACAGGAATATACATAGACCTAAGTCAAGCAAATCGACACAGATACATCCTGCAATTGCTGCTTTGAGTAGTCAATGTGGGTACTCCTCCGACACCCTTGAACCAAAGCAAGGCAAGGCATTGAGACACGAAGAATCACCCTCACCAACCTCATCTTTTGGGGAATACTTTCAGAAAAGCTGCGATGAACAAAATATTGTTGACCAAAGGTGGAGCAGATTTCAGAAAGACCATTTTGGATTTTGGCCACAAAACCAATGGGTGGCTTTCTCAACCGAATCATCCTCGCTTAGCAGAGTGGATGAGTGGGTAAAAGATCTCGAAATTGAGCAGCCACCTCCCGAGGATGACTTTGTTGACGACGGCACTGGAAACACTGCCTTCCCACCTTCTCCTGATGATGGTAGATCGATGGCAAGAAGCACATCTCAATTCATTCGACATTCAGATGCCAATATTTCAAAAGAGATAATGAATGCCAATAGTCTGGTCCAGTCCCTGAACCCCGCCTCAACTGCTGCTCATATATCAGGCATTGGTATAAAAGCCATTCCCTCTCTTTCACACTTCTTCAGTCTCCGCTCTGTCAACTTGTCAAGCAATCTTATAGCTCACATCACGCCTGGATTTCTCCCAAAGGGTATTCATACCCTGAATCTTTCAAGAAACAAAATCAACACTATTGAGGGCCTCAGAGAATTAACCCGGCTCCGGGTACTTGATTTAAGTTATAATCGCATCTCAAGAATTGGACAAGGATTATCAAATTGTACCTTAGTCAAAGAACTATATCTTGCCGGGAACAAGATAGGTGATGTTGAGGGGCTCCACAGGTTACTGAAGCTAACAGTTCTGGACTTGAGCTTTAACAAGATCGCAACCACAAAAGCATTAGGCCAGCTGGTGGCTAACTACAACTCACTTCAGGCCTTGAGTCTGCTAGGAAATCCAATTCAAAGCAACATCAGTGATGAGCAGCTGCGCAAAGCAGTTAGTGGTCTTCTTCCAAAGCTTGTGTACCTGAACAAGCAATCTATAAAGCCTCAAAGGGGACGAGAAATACTCACTGATAGTGTTGCCAAAGCTGCACTTGGGAACAGCGGCCACAACTCCTACAGAAGAGTACTGAAGAAAGGTGGTAGCCAAGGAGGGCCAAGTTCCTCAGGTGTACATAGAGGCAGTGCTAGTGTTTCCCACAAAAGCAGACACAGGTCAAGGAGCCGAACTAAGCGTCATTAG 2016 0.4509 MALCRCLSFFTGKKEKNKGAAEGSSTGDLKAQLGEIQHPKISSERRDLKPATLDVAVPFGVQKNSRGNVRIMNHESPAKTEVEEAYEGEDEHEQSPSIKRELSDFDLQVHQAAANKGICDPSNEEIKYPSAYEDQANIQFEDTDHKYSIKSDDIIQSGHVSDPGIGKTDFWASPELKRSCSNLERRDVLMKTSHLFPTSKSQSFEDLHGLSAYQMANLESPRSAMTHCSADKVMLKRHSSSQVLPSRSKRLWWKLFLWSHRNIHRPKSSKSTQIHPAIAALSSQCGYSSDTLEPKQGKALRHEESPSPTSSFGEYFQKSCDEQNIVDQRWSRFQKDHFGFWPQNQWVAFSTESSSLSRVDEWVKDLEIEQPPPEDDFVDDGTGNTAFPPSPDDGRSMARSTSQFIRHSDANISKEIMNANSLVQSLNPASTAAHISGIGIKAIPSLSHFFSLRSVNLSSNLIAHITPGFLPKGIHTLNLSRNKINTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTLVKELYLAGNKIGDVEGLHRLLKLTVLDLSFNKIATTKALGQLVANYNSLQALSLLGNPIQSNISDEQLRKAVSGLLPKLVYLNKQSIKPQRGREILTDSVAKAALGNSGHNSYRRVLKKGGSQGGPSSSGVHRGSASVSHKSRHRSRSRTKRH* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0856 671 MobiDBLite consensus disorder prediction 640 654 - -
Vra5g0856 671 MobiDBLite consensus disorder prediction 629 671 - -
Vra5g0856 671 ProSiteProfiles Leucine-rich repeat profile. 495 517 IPR001611 GO:0005515
Vra5g0856 671 PANTHER NISCHARIN RELATED 4 670 - -
Vra5g0856 671 MobiDBLite consensus disorder prediction 370 398 - -
Vra5g0856 671 MobiDBLite consensus disorder prediction 655 671 - -
Vra5g0856 671 ProSiteProfiles Leucine-rich repeat profile. 473 494 IPR001611 GO:0005515
Vra5g0856 671 Gene3D Ribonuclease Inhibitor 512 610 IPR032675 -
Vra5g0856 671 Gene3D Ribonuclease Inhibitor 395 511 IPR032675 -
Vra5g0856 671 SUPERFAMILY Outer arm dynein light chain 1 440 605 - -
Vra5g0856 671 MobiDBLite consensus disorder prediction 76 95 - -
Vra5g0856 671 Pfam Leucine rich repeat 451 506 IPR001611 GO:0005515
Vra5g0856 671 Pfam Leucine Rich repeat 516 532 IPR001611 GO:0005515
Vra5g0856 671 Pfam Leucine Rich repeat 540 551 IPR001611 GO:0005515
Vra5g0856 671 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 4 670 - -
Vra5g0856 671 SMART LRR_sd22_2 538 559 - -
Vra5g0856 671 SMART LRR_sd22_2 471 492 - -
Vra5g0856 671 SMART LRR_sd22_2 516 537 - -
Vra5g0856 671 SMART LRR_sd22_2 493 515 - -
Vra5g0856 671 ProSiteProfiles Leucine-rich repeat profile. 540 561 IPR001611 GO:0005515
Vra5g0856 671 ProSiteProfiles Leucine-rich repeat profile. 518 539 IPR001611 GO:0005515
Vra5g0856 671 MobiDBLite consensus disorder prediction 288 312 - -
Vra5g0856 671 SMART LRR_typ_2 538 560 IPR003591 -
Vra5g0856 671 SMART LRR_typ_2 449 471 IPR003591 -
Vra5g0856 671 SMART LRR_typ_2 493 516 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0856 Vra-Chr5 14428911 14431754 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0856 - - gmx:100813969 1060.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g0856 5 14428911 14431754 Vra5g0856 5 14428911 14431754 ECH